| Entry |
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| Symbol |
ercc3
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| Name |
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPB
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| KO |
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| Organism |
onl Oreochromis niloticus (Nile tilapia)
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| Pathway |
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| Brite |
KEGG Orthology (KO) [BR:onl00001]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
100700468 (ercc3)
09124 Replication and repair
03420 Nucleotide excision repair
100700468 (ercc3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:onl03021]
100700468 (ercc3)
03400 DNA repair and recombination proteins [BR:onl03400]
100700468 (ercc3)
Enzymes [BR:onl01000]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
100700468 (ercc3)
Transcription machinery [BR:onl03021]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
100700468 (ercc3)
DNA repair and recombination proteins [BR:onl03400]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
100700468 (ercc3)
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
LG1:14790372..14798192
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| AA seq |
783 aa
MGKRDKGDREKKSKKRFYEEEDDEEEAVGSESQEAIPAAAGKQVDESSTKLDEYGAKDYR
AQMLLKNDHSSRPLWVAPDGHIFLEAFSPVYKYAQDFLVAIAEPVCRPNHIHEYKLTAYS
LYAAVSVGLQTSDIVEYLQKLSKTSVPDGIVQFIKLCTVSYGKVKLVLKHNRYFVESAFP
DVIQRLLQDNVIRECRLRAADGTDAELITEVIHSKSAISKSVQEKEGTSSSQQPSDGETS
TQQVPEDIFSYYEQMDKEEEEEEETQTVSFEIRQEMIEELQKRCIQLEYPLLAEYDFRND
TVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTAACTVRKR
CLVLGNSSVSVEQWKSQFKMWSTIDDSQICRFTSDAKDKPIGCSVAISTYSMLGHTTKRS
WEAERVMEWMRSQEWGLIILDEVHTIPARMFRRVLTIVQAHCKLGLTATLVREDDKIVDL
NFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNK
FRACQFLIRFHERRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNP
KINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAYFY
SLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEEEDLMFSSRDEQQQLLQKVLAAS
DMDAEEEVVAGEVGTRPQFSRRTGTMSSMSGADDTIYMEYQSRSSKALAASKSVHPLFKR
FRK |
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| NT seq |
2352 nt +upstreamnt +downstreamnt
atgggtaaaagggataaaggagatcgggagaaaaagtccaagaagcgtttctatgaggaa
gaagatgatgaagaagaggcggtggggagcgagtctcaagaggccatacctgctgctgca
ggaaaacaagtggacgagtcgagtacaaaactagatgaatatggagccaaagattaccgt
gctcagatgctgttaaaaaatgatcactcctcacgtccgctctgggtggctccagatgga
cacatctttctggaagctttttctccagtgtataaatatgcccaggatttcttggtggcc
attgcagagccagtatgcagacctaaccatatccatgagtacaagctaactgcctactcc
ttatatgcagctgtcagtgtggggctccagacctctgatattgtggagtacctgcagaag
ctcagcaagacatctgtacctgatggaatcgtgcagttcataaagctctgcacagtgagc
tacggcaaagtcaagctggtgctcaagcacaataggtattttgttgagagtgccttccct
gatgtgatccagcgacttctgcaagacaacgtgatccgtgaatgtcgtctccgtgctgca
gatggaaccgatgctgagctcattactgaagtcatccacagcaagtcagcgatttctaag
tctgttcaagaaaaagaaggcacttccagctcacagcagcccagcgatggggaaacctca
acccagcaggtccctgaggacatcttcagctactatgagcagatggataaagaagaagag
gaggaagaggagactcagacggtgtcctttgaaattcgccaggagatgattgaagagctg
cagaagcgttgtattcagctggagtaccccctcctggcagagtacgacttccgcaatgac
acagtcaaccccgacatcaacatagaccttaagcccacggccgtgttgaggccctatcag
gaaaagagtctgcgcaaaatgtttggaaacggtcgcgcccgctcaggagtcattgtgctg
ccatgtggagcgggtaaatccctggtcggggtgacagcggcctgcacggtgcgcaaacgc
tgcttggtgctgggtaattcctctgtatctgtggagcagtggaagtcccagttcaagatg
tggtccactattgacgactctcagatctgccgcttcacttctgatgcgaaggacaagcct
attggttgctctgtggccatcagcacctactctatgctgggtcacaccaccaagcggtcc
tgggaagctgaaagggtcatggagtggatgcggagccaagagtggggactcatcatactg
gatgaagttcacactatccctgcaaggatgtttcgtcgtgtcctgactatagtccaggcc
cattgcaaacttgggctcactgccacattggtcagagaggatgataagattgtggatctc
aatttcctaattgggcctaagctatacgaggccaactggatggaactgcagaacaatggc
tacattgctaaagtccagtgtgcagaggtgtggtgcccgatgtctccggagttttacaga
gagtacgttgctatcaagacgaagaagcggatcctgctttacacgatgaatcccaataag
ttccgtgcttgccagtttctcattcgcttccatgagcgacggaatgacaaaatcattgtg
tttgctgataacgtgtttgccttgaaggaatatgccattcgtctcaacaagccttacatc
tacggtccgacctctcagggggagcgaatgcagattttacagaacttcaaacacaacccc
aagatcaacaccattttcatctcaaaggttggagacacttcgtttgacttgccagaagcc
aatgtgctgatccagatctcgtcccatggtggatcacgcagacaggaggcccagaggctt
gggagagtcttaagagccaaaaaaggaatggtggcagaggagtacaatgcatacttctat
tcactagtctcccaggatacccaggaaatggcttactccaccaagaggcagaggtttctc
gtggaccagggatacagctttaaggtaatcacaaagttggcaggtatggaggaagaggac
ttgatgttctccagcagagatgagcaacagcagctgcttcagaaggtcctcgctgcttct
gacatggatgccgaggaggaggtggtggcaggggaggtgggcacacgacctcagttctca
aggcgaaccggcaccatgagctccatgtccggagcagatgacaccatctacatggaatat
cagagcagaagcagcaaagcccttgcagcgagcaagagcgttcatccactgttcaagcgc
ttcagaaagtag |
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