KEGG   Oreochromis niloticus (Nile tilapia): 100700468
Entry
100700468         CDS       T06104                                 
Symbol
ercc3
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPB
  KO
K10843  DNA excision repair protein ERCC-3 [EC:5.6.2.4]
Organism
onl  Oreochromis niloticus (Nile tilapia)
Pathway
onl03022  Basal transcription factors
onl03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:onl00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    100700468 (ercc3)
  09124 Replication and repair
   03420 Nucleotide excision repair
    100700468 (ercc3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:onl03021]
    100700468 (ercc3)
   03400 DNA repair and recombination proteins [BR:onl03400]
    100700468 (ercc3)
Enzymes [BR:onl01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     100700468 (ercc3)
Transcription machinery [BR:onl03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     100700468 (ercc3)
DNA repair and recombination proteins [BR:onl03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     100700468 (ercc3)
SSDB
Motif
Pfam: ERCC3_RAD25_C Helicase_C_3 ResIII Helicase_C DEAD SNF2-rel_dom AAA_34 AAA_22
Other DBs
NCBI-GeneID: 100700468
NCBI-ProteinID: XP_003445775
Ensembl: ENSONIG00000003255
LinkDB
Position
LG1:14790372..14798192
AA seq 783 aa
MGKRDKGDREKKSKKRFYEEEDDEEEAVGSESQEAIPAAAGKQVDESSTKLDEYGAKDYR
AQMLLKNDHSSRPLWVAPDGHIFLEAFSPVYKYAQDFLVAIAEPVCRPNHIHEYKLTAYS
LYAAVSVGLQTSDIVEYLQKLSKTSVPDGIVQFIKLCTVSYGKVKLVLKHNRYFVESAFP
DVIQRLLQDNVIRECRLRAADGTDAELITEVIHSKSAISKSVQEKEGTSSSQQPSDGETS
TQQVPEDIFSYYEQMDKEEEEEEETQTVSFEIRQEMIEELQKRCIQLEYPLLAEYDFRND
TVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTAACTVRKR
CLVLGNSSVSVEQWKSQFKMWSTIDDSQICRFTSDAKDKPIGCSVAISTYSMLGHTTKRS
WEAERVMEWMRSQEWGLIILDEVHTIPARMFRRVLTIVQAHCKLGLTATLVREDDKIVDL
NFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNK
FRACQFLIRFHERRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNP
KINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAYFY
SLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEEEDLMFSSRDEQQQLLQKVLAAS
DMDAEEEVVAGEVGTRPQFSRRTGTMSSMSGADDTIYMEYQSRSSKALAASKSVHPLFKR
FRK
NT seq 2352 nt   +upstreamnt  +downstreamnt
atgggtaaaagggataaaggagatcgggagaaaaagtccaagaagcgtttctatgaggaa
gaagatgatgaagaagaggcggtggggagcgagtctcaagaggccatacctgctgctgca
ggaaaacaagtggacgagtcgagtacaaaactagatgaatatggagccaaagattaccgt
gctcagatgctgttaaaaaatgatcactcctcacgtccgctctgggtggctccagatgga
cacatctttctggaagctttttctccagtgtataaatatgcccaggatttcttggtggcc
attgcagagccagtatgcagacctaaccatatccatgagtacaagctaactgcctactcc
ttatatgcagctgtcagtgtggggctccagacctctgatattgtggagtacctgcagaag
ctcagcaagacatctgtacctgatggaatcgtgcagttcataaagctctgcacagtgagc
tacggcaaagtcaagctggtgctcaagcacaataggtattttgttgagagtgccttccct
gatgtgatccagcgacttctgcaagacaacgtgatccgtgaatgtcgtctccgtgctgca
gatggaaccgatgctgagctcattactgaagtcatccacagcaagtcagcgatttctaag
tctgttcaagaaaaagaaggcacttccagctcacagcagcccagcgatggggaaacctca
acccagcaggtccctgaggacatcttcagctactatgagcagatggataaagaagaagag
gaggaagaggagactcagacggtgtcctttgaaattcgccaggagatgattgaagagctg
cagaagcgttgtattcagctggagtaccccctcctggcagagtacgacttccgcaatgac
acagtcaaccccgacatcaacatagaccttaagcccacggccgtgttgaggccctatcag
gaaaagagtctgcgcaaaatgtttggaaacggtcgcgcccgctcaggagtcattgtgctg
ccatgtggagcgggtaaatccctggtcggggtgacagcggcctgcacggtgcgcaaacgc
tgcttggtgctgggtaattcctctgtatctgtggagcagtggaagtcccagttcaagatg
tggtccactattgacgactctcagatctgccgcttcacttctgatgcgaaggacaagcct
attggttgctctgtggccatcagcacctactctatgctgggtcacaccaccaagcggtcc
tgggaagctgaaagggtcatggagtggatgcggagccaagagtggggactcatcatactg
gatgaagttcacactatccctgcaaggatgtttcgtcgtgtcctgactatagtccaggcc
cattgcaaacttgggctcactgccacattggtcagagaggatgataagattgtggatctc
aatttcctaattgggcctaagctatacgaggccaactggatggaactgcagaacaatggc
tacattgctaaagtccagtgtgcagaggtgtggtgcccgatgtctccggagttttacaga
gagtacgttgctatcaagacgaagaagcggatcctgctttacacgatgaatcccaataag
ttccgtgcttgccagtttctcattcgcttccatgagcgacggaatgacaaaatcattgtg
tttgctgataacgtgtttgccttgaaggaatatgccattcgtctcaacaagccttacatc
tacggtccgacctctcagggggagcgaatgcagattttacagaacttcaaacacaacccc
aagatcaacaccattttcatctcaaaggttggagacacttcgtttgacttgccagaagcc
aatgtgctgatccagatctcgtcccatggtggatcacgcagacaggaggcccagaggctt
gggagagtcttaagagccaaaaaaggaatggtggcagaggagtacaatgcatacttctat
tcactagtctcccaggatacccaggaaatggcttactccaccaagaggcagaggtttctc
gtggaccagggatacagctttaaggtaatcacaaagttggcaggtatggaggaagaggac
ttgatgttctccagcagagatgagcaacagcagctgcttcagaaggtcctcgctgcttct
gacatggatgccgaggaggaggtggtggcaggggaggtgggcacacgacctcagttctca
aggcgaaccggcaccatgagctccatgtccggagcagatgacaccatctacatggaatat
cagagcagaagcagcaaagcccttgcagcgagcaagagcgttcatccactgttcaagcgc
ttcagaaagtag

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