Oreochromis niloticus (Nile tilapia): 100700481
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Entry
100700481 CDS
T06104
Name
(RefSeq) collagen alpha-5(IV) chain
KO
K06237
collagen type IV alpha
Organism
onl
Oreochromis niloticus (Nile tilapia)
Pathway
onl04510
Focal adhesion
onl04512
ECM-receptor interaction
onl04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
onl00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
100700481
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
100700481
09142 Cell motility
04820 Cytoskeleton in muscle cells
100700481
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
onl04147
]
100700481
00536 Glycosaminoglycan binding proteins [BR:
onl00536
]
100700481
Exosome [BR:
onl04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
100700481
Glycosaminoglycan binding proteins [BR:
onl00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100700481
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
100700481
NCBI-ProteinID:
XP_013129112
LinkDB
All DBs
Position
LG14:complement(40323997..40380389)
Genome browser
AA seq
1667 aa
AA seq
DB search
MEPPAARRRRILPLLVLWSCLSAAVHGEKACHCSGKSLCHCDGVKGQKGEKGYPGETGLP
GNIGYPGNEGDQGKLGEKGEPGPAGSPGLKGARGLAGEPGFPGAPGLPGLPGHEGPIGRP
GIPGCNGTKGDAGFPGHPGLPGPAGRQGRDGPRGMKGETRVFPETQDIKGARGPPGPKGA
TGLSGDPGEPGLTGSPGFSGFPGIPGLPGLRGEKGQEGPSPVIPGPRGLKGDRGPPGVPG
PKGIKLYAEGPKELKGEPGDSGEKGCPGRRGKPGRLGIKGEKGEKGDTGSLGKPGKDGLR
GEFGEQGDPGEPGFLGPPGIDGDMGEKGDRGPPGAPGDMVWNRIYLKGQPGLPGPRGPPG
AAGVQGYIGLPGEKGEPGVPLPGPPGIQGPPGSFGPKGDRGEEGPSTVGPTGLTGKPGLQ
GAIGEPGEPGIPDYLEGGAGLPGPKGLKGSMGPLGEKGTRGQKGEKGEMCFTCPVISAEP
GPPGKKGEKGDIGLPGLAGFPGSKGFKGVKGPRGQPGPQGSLGFPGYRGLSGPPGDPGIM
TRVGQKGEEGSQGDPGQPGYQGSDGPPGVQGSKGLQGAKGDDGPLGQKGDRGLCGSPGPR
GPTGQMGPLGPLGIGEPGPPGSKGNMGDRGERGQPGQKGEKGAQGNMIVSPGDPGQKGQK
GVSGVSGPEGAVGTKGPRGACGSKGEKGDKGFSVQGPPGFPGVKGVKGFPGAPGVPSFGI
KGRAGPSGPPGMPGPKGERGFGFPGPKGQSGLQGEDGSVGPPGDPGPQGINGEPGPLGRA
GLPGSKGHRGLCGVAGPIGIIGICVPGPPGPDGEPGPTGFTGFPGCRGPKGLKGDAGRPG
TGVLGIQGPSGSKGNVGKPGPIGTMGPQGQRGSDGEPGSPGIRGDMGPPGPPGIPGDDGK
PGEPGRPGPKGQMGANGFCGSQGAPGPRGDQGETGPKGLQTNIEIFGEPGEKGLAGLRGL
TGDKGDKGFSGPRGQDGTKGRTGNCGPQGLPGDPGRDGRKGPPGSCGPRGDKGKLGAPGL
KGQKGCAGLCGPPGAVGSQGYNGPKGCKGEPSPPGPGSKGYPGEKGSPGFPGPPGSKGPP
GNNGLFGPPGVSGPCGPKGPTGLPGCEGPPGSTGEKGCDGPKGKPGVPGPSGLKGNTGPP
GVPGPSGPRGNQGQDGIPGPPGEKGAMGVSKPGPPGRDGEKGPPGCTGEKGPPGSLGPPG
PYGPTGNPGCPGPPGPPGPPGLPGTEGVCFSGGKGGIGPAGCRGSKGPPGCKGPPGPPGP
GFKGDKGCKGTPGIAGKPGSNGDSGPKGQPGACGLPGSQGPTGRKGDIGVRGPVGMNGNK
GPPGGCGLPGPQGCPGQKGTKGLNVTRQLLLFPGDKGSPGEPGPCGEKGFPGSPGNRGPQ
GMKGHCGNTGKKGQIGGPGIKGQKGDGGVPGTRGCPGPQGPVGFKGSRGTPGTMSASPEK
ISFLFTRHSQTTDIPKCPQETKLIYEGYSLLFINGNSRAHGQDLGTLGSCLRRFTTMPFL
ICSPGQNCLYAAHNDLSYWLSTNKLVAEGLPFVSNGSLSNYISRCSVCEARASTVIAIHS
QTSMIPTCPTNWVSLWTGYSFVMETGAGAEGSGQPLASPGSCLEHFRKLPFIECHERGTC
NFYTNSYSYWLAALNPSNMFSRPQLWRDSGLLPGNRISRCRVCMNQI
NT seq
5004 nt
NT seq
+upstream
nt +downstream
nt
atggagcctccggccgcccggaggcgcaggatcctcccgctgctggttctctggagctgc
ctgagcgctgccgtgcacggagagaaggcgtgccactgcagcgggaagtctttgtgtcac
tgcgatggggtcaaaggtcagaagggtgaaaaaggttaccccggggaaactgggcttcct
ggaaacattggttatcctggaaatgagggcgatcagggcaaactaggagaaaagggtgaa
ccaggacctgcaggaagcccgggtctgaagggtgcccggggtttggcgggagaaccaggt
ttcccaggagctccaggactgccgggactgcctggacacgaaggaccgattggtcgacca
ggaatcccaggatgcaacgggacgaagggggatgctggttttccagggcatcctggactt
cctggacccgcaggcaggcaggggcgtgatggtcctcggggcatgaagggagagacgaga
gtgttccccgagactcaggatataaaaggagcacgaggtccaccaggaccaaaaggcgcc
acggggctcagtggggatccaggtgaaccgggcctgacaggatcaccgggattctctgga
tttcctggaattccaggtcttccagggttgagaggagaaaagggtcaggaaggtcccagt
ccagtgatcccaggtccacgaggactgaagggtgaccggggacctccaggagttcctggg
ccaaaaggaatcaaactgtatgctgagggacccaaagagctgaagggagaaccaggtgac
agtggagaaaaaggttgtcctggtcgtcgcggtaaacctgggaggttgggaattaaagga
gagaagggggagaaaggtgacactggctccctgggtaaaccagggaaggatggactccgt
ggagagtttggagaacagggagaccccggagagcctgggtttctcggacctccaggtatt
gatggagacatgggagagaaaggtgaccgtggtcctccgggtgctccgggagatatggtg
tggaataggatatatctgaaaggccagcctggtttgcccgggccccgggggcccccagga
gctgctggagtacaaggatacatcggtttacctggagaaaagggcgagccaggtgttcct
ttgcctggtcctccggggatacagggaccacctggatcatttggaccaaaaggagaccga
ggagaagagggcccctccactgttggccccacaggcctgactggaaagccaggacttcag
ggtgctatcggagagcccggagaaccaggaataccagactacctcgagggaggcgcagga
ctgccaggacctaaaggtttgaagggctcgatgggacctcttggagaaaaaggcacgaga
ggacagaagggtgagaagggggagatgtgtttcacctgtcctgttatttctgctgagcct
ggacccccaggtaaaaaaggagagaaaggtgatatcgggctgccaggcttggctggtttt
cctggatctaaaggtttcaaaggagtgaaaggtcctagaggacaacctggtccacagggt
tcactggggttccctggctaccggggactctcaggacctcctggtgacccaggcatcatg
acgagggtggggcagaagggtgaggagggatcacagggagatccgggacaaccgggatac
cagggaagtgatggacctccaggagttcaaggatcaaaaggtcttcagggagcaaaagga
gacgatggaccgctggggcaaaaaggagacaggggcttgtgtgggtcccctggtcccagg
ggaccaacagggcagatgggacctttgggacctcttggtattggcgagccagggcctcca
ggaagtaaaggcaacatgggagaccgtggagagcgaggacaacctggacaaaaaggtgaa
aaaggtgcacaaggaaatatgattgtttctccaggagatccaggtcagaaaggacagaaa
ggtgtatctggagtctctggaccggaaggtgccgtgggaactaaaggaccaagaggagct
tgtggttcaaagggagaaaagggagataaaggattttcagtccagggacctccaggcttc
ccaggcgtcaaaggagtgaagggtttcccaggagccccaggtgtaccaagttttggcatt
aaaggacgagcaggaccatcaggacctcctgggatgccgggaccaaagggggaaaggggt
tttggttttccaggcccaaagggtcagtcaggacttcagggagaagatggctctgtagga
cctccaggtgaccctggacctcaaggaataaatggagagccaggaccactgggacgagct
ggtctgccaggatccaaaggtcacagaggtttgtgtggtgtagctggtcccattggtatt
attggaatctgtgtacctggacctcctggacctgatggagagccaggaccgacgggcttc
actggatttccagggtgccgaggcccaaaaggtttgaagggagacgctgggcggcctggc
acaggagtattggggattcaggggccatctgggtccaaagggaatgttggaaaaccagga
cctataggaacgatgggaccacaaggccagagaggtagtgatggggagccaggaagccca
ggaatcagaggagacatgggtcctccaggaccacctgggattccaggagatgacgggaaa
ccaggagagcctggacgaccaggaccaaaaggtcagatgggtgcaaatgggttctgtggc
tctcagggtgctccgggacctcgaggggaccaaggagaaactggaccaaaaggacttcag
acaaacattgagatatttggagagcctggagagaaaggtttagcagggctcagaggcctc
actggcgataaaggagacaagggcttctccgggccacgaggccaagatggaaccaagggt
cgaactggaaactgtgggcctcaaggacttcctggtgaccctggtagagatggaaggaaa
ggtcctcctggtagctgtggaccccgtggtgacaaaggaaaactaggggcaccaggtttg
aagggtcagaaaggttgtgctggactttgtggtcctcctggtgcagttggaagtcaagga
tacaatggacctaaaggttgtaaaggagaacctagtccacctggaccaggatctaaagga
tatccaggagagaagggaagtccaggatttccaggacctccaggtagtaagggaccacca
ggaaacaatggattgttcggtcccccaggagtcagtggcccctgtggccctaaaggaccc
actggactacctggttgcgaaggacctcctgggtctactggtgaaaaaggttgtgatggt
cctaaaggaaaacctggagttccaggtccctctgggctcaaaggtaacactgggccacct
ggagttcctggcccatctggtccaagaggaaaccagggacaggatgggatacctggacct
cctggagagaaaggagcaatgggagtatctaagcctggacctccgggacgagatggagag
aaaggtccacctgggtgtaccggggagaagggtcctcccggttcccttggacctcctgga
ccatatggtccaacaggaaatccaggctgccccggacctcctggaccacctggccctccc
ggtcttcctgggacggaaggagtctgcttttcaggaggcaagggtggaataggaccggct
ggatgtcgaggatcaaaaggtccacctggctgtaagggccctcctggtcctccaggtcct
ggtttcaaaggggataagggatgtaaaggaacaccaggtattgcaggaaaacctggttcc
aatggagacagtggtccaaaaggccagccgggtgcatgtggcctaccaggctcacaagga
cccacaggcaggaagggagatataggtgtcagaggacctgttgggatgaatgggaacaaa
ggcccaccgggtggatgtggcttaccaggacctcagggctgtcctggacaaaaaggaaca
aaggggctaaatgtaaccagacagttgctgttgtttcccggagacaaaggctcacctgga
gagccagggccctgtggggaaaaaggatttccagggtcccctggaaatcgtggacctcaa
ggcatgaagggtcactgtgggaacacgggtaaaaaaggacagattggaggccctgggata
aaaggacaaaagggagatggaggagtgccgggaacaagaggttgtccaggtccacaaggt
ccagttggctttaaaggttctcggggtacaccgggtactatgtcagcatcacctgaaaag
atcagcttcttgttcaccagacacagccagacaaccgacatcccaaaatgtcctcaagaa
acaaaactcatatacgagggttactccctgctgttcatcaacggcaacagtcgagctcac
ggacaagacctgggtacgttaggtagttgtctgaggcgctttaccaccatgcccttcctg
atctgcagccctgggcagaactgtctctacgccgcacacaacgacttgtcctactggttg
tccacaaataaactggtggcagaagggctgcccttcgtcagtaacgggtcactgagcaac
tacatcagccggtgttctgtgtgtgaggccagagcttccacagtaatcgccatccacagt
cagaccagtatgattccaacctgtcccaccaactgggtctcgctctggacgggttactcc
tttgtgatggaaacgggagcaggggctgaggggtctggtcagcctctggcctcacctggg
tcctgtctagaacacttcaggaagctccccttcattgagtgtcatgaaagaggaacctgc
aacttctacaccaactcctacagctattggctggctgctctgaaccccagcaacatgttc
agtcgaccgcagctctggagagactcaggactccttccaggtaaccggatcagccgctgc
cgagtctgcatgaaccagatataa
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