| Entry |
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| Name |
(RefSeq) collagen alpha-5(IV) chain isoform X1
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| KO |
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| Organism |
onl Oreochromis niloticus (Nile tilapia)
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| Pathway |
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| Brite |
KEGG Orthology (KO) [BR:onl00001]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
100700747
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
100700747
09142 Cell motility
04820 Cytoskeleton in muscle cells
100700747
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
100700747
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:onl04147]
100700747
00536 Glycosaminoglycan binding proteins [BR:onl00536]
100700747
Exosome [BR:onl04147]
Exosomal proteins
Exosomal proteins of other cancer cells
100700747
Glycosaminoglycan binding proteins [BR:onl00536]
Heparan sulfate / Heparin
Extracellular matrix molecules
100700747
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
LG14:complement(40464276..40494246)
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| AA seq |
1589 aa
MGFPGPQGPPGEKGQRGDEGPTGAAGLKGHMGSLGVPGFPGLDGVPGHPGPAGGPGRPGL
DGCNGTRGDKGKAGLPGEQGRDGELGFPGPKGYPGDQAVYFIRYPGVTGDAGPSGCPGLQ
GEQGFSGSKGATGSPGPKGQDGVPGSPGSRGSPGERGRSLPGQKGDEGDQGLQGRPGPFE
YVDPPEDLYIKGDKGSRGVKGVCGIDGLPGLDGPPGMEGEKGILGLPGPRGLPGQPGLRG
NKGVKGIQGSSGLPGLIGRKGPKGKRGDPGPPGVLRVADITYTGRVGDPGSPGPHGLNGD
RGRMGIPGAPGLPGRSILGLRGVVGQKGVPGCKGVRGDPGQISTEKPTPGEPGKPGRPGF
RGPKGQQGVPGTYCLPGASGPPGDPGVSGPTGFQGSLGIKGSCGGCSCGVPLVLRGAPGP
MGDLGFPGFQGSPGPTGPRGEYGVPGDTGETGEQGRAGFPGFKGFKGQKGDLTVEDIEGE
KGNKGQQGPAGRQGFPGRRGQTGPPGVPGNPGFQGESFSSFPGERGLRGTTGLKGYLGPP
GPRGQGADGAVGKHGLPGDPGPTGSCGPPGLKGVKGDPPPFRPIRPGGPGEKGDLGSAGY
AGSQGPPGFPGGIGSDGPKGDNGKDGLPGIPGKQGPQGVTGDYGDEGPEGFSYDGDPGSP
GLRGSAGLRGPTGDSAVGLPGSIGFPGTRGPQGPKGVPGNPGQHGLPGISGLHGCRGAKG
QKGDDGAPGITGCPGPTSNRCDPGKPGTMGQSGFRGSTGAQGISGDKGEIGNVGSEGIGP
KGSVGASGLPGVRGKPGGQGLPGLSGSSGLQGTGGPKGLTGPWGWEGVPGNPGKPGVPGD
LGRTGERGFNGRDGGQGIEGPKGQKGFQGPTGPPGPTNYILIKGKRGNPGHPSTVGFTGP
RGSKGMQGAAGKPGHPGCDGPPGIVGPPGPPGPCGKQGPVGPPGLKGFEGYCGFPGNVGD
PGDKGCTGKPGEPGSPGCKGPKGNKGESIGCPGPNGERGPRGDKGHLGPPGSPGDLGGLG
FTGAPGEKGCRGEKGHCGSIGPRGVIGPPGPRGQPGTPGIQGKCGGDGPPGHEGCRGLKG
PPGPLGLHGLDGLKGEKGAIGTRGRGFPGVKGSLGPPGDKGPPGHQGLCGTSQPGPPGYK
GPFGPKGPPGKCGPPGKPGPDCKTPIKGPCGDPGCPGPDGEPGNLGEIGDPGQNPPIRGD
IGDNGNVGCQGPKGPRGCPGHIGTQGCTGYPGQKGMRGDTGLLGIPGPRGCKGVPGHCGS
PGLPGPPGVHGPKGEKGDTLDPALISPPKGPPGETGSTGQFGHPGLNGEQGPCGPKGDKG
DYGPQGCKGCDGPPGLKGDKGEPGLPGESGVVGQKGNRGPEGEKGSHGPTKELNLGLLVV
HSQSANTPRCPGNMNTLWEGFSLLYLEGQERAHTQDLGQPGSCMRVFSTLPFAPCNKHTC
SYASRNDKSYWLTTMEPVPREHVSGVNIKKYISRCVVCEAPSLPIAVHSQSSQSVECPEN
WTELWDGYSFVMHTGAGDEGGGQPLTSSGSCLKAYKAQPFVECQGPRGTCHFFANMYSFW
LTTLTDPAMLTNDQEQRRSIAKCKVCMRL |
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| NT seq |
4770 nt +upstreamnt +downstreamnt
atgggcttcccgggtcctcaggggcctccaggagagaaaggccagagaggagatgagggg
ccaacaggagctgcaggcctgaaaggacatatgggatctcttggtgttcctggttttcca
ggtttggatggagttccgggacacccgggacctgctggaggtccaggacgtccaggtctg
gatggatgtaatggaactagaggagacaaggggaaagctggccttccgggagaacaagga
cgtgacggagaactgggttttccaggaccgaaaggatatccaggagatcaggcggtgtac
ttcatacgttaccctggagtgactggagatgctgggcccagtggatgtcctggtctgcag
ggtgagcagggcttctcgggatcgaagggagcaacgggttctccaggaccgaaaggccaa
gacggtgtacctggaagcccgggttctcgaggttcacccggggaaagaggtcgatctcta
cctggacagaaaggagacgagggggatcagggtttgcagggacgtccagggccgtttgag
tatgttgaccctcccgaagacctctacatcaaaggagacaaaggctcccggggagttaaa
ggagtctgtggaattgacggactgccgggtctggatgggccacctgggatggaaggggag
aaggggattttggggcttcctggaccaaggggactccctggacaacctggtctccgtggg
aacaaaggagttaagggaatccaaggaagctcaggactcccaggtctgattggacgaaag
ggtcctaagggcaaaaggggagatcccgggcctccaggcgtcctccgggtggcagacatc
acgtacaccggtcgagttggagatcccgggtcacccggcccgcacggccttaatggagac
agaggacggatgggaatacctggcgccccaggactgcctggcagatcaatactcggactg
cggggagttgtaggtcagaagggagttccaggatgcaagggggtcagaggagatccaggt
cagatctctacagagaaacccacacctggagaacctggaaaaccagggcgccctggattc
aggggacctaaaggacagcaaggtgttccaggtacctactgtctccctggagcctcagga
ccacctggggacccaggtgtgtcagggcccacagggtttcagggctcactgggaattaaa
ggtagttgtggtggctgttcttgtggcgttcctcttgtactaagaggtgcacctggccct
atgggtgacttgggatttccagggttccaaggatcccccggacccacaggtcctcgggga
gagtacggtgttcccggagacacaggagagactggtgagcagggtcgggccggattcccg
ggtttcaaaggctttaaaggacagaaaggagatttaacggtggaggatattgaaggtgag
aagggaaacaagggacagcagggccctgcaggcagacaagggttcccaggaagaagagga
cagactgggcccccaggggtccctggaaatcccggtttccagggtgagagtttttccagt
ttccctggagaaaggggcctcagaggaactacagggttaaagggatatttaggacctcca
ggtccccgaggacaaggtgcagatggagctgtgggaaaacatggactccctggggatcca
ggacctactggatcctgtggccccccggggttaaagggggttaaaggtgaccctccaccc
tttagacccataagacctggtggccccggagagaagggagaccttggaagtgcaggctac
gcaggttcccagggtcctccaggttttcctggtggcattgggtcagatgggcctaaagga
gacaatggaaaggatggacttcctggaatacctgggaaacaaggacctcagggtgtcact
ggagattatggagatgaaggacctgaaggcttcagttatgatggagatccaggctctccg
ggacttcgaggctctgcaggtctcaggggaccaacaggagactctgctgttgggctccca
ggctctattggctttccagggacacggggccctcaaggacccaaaggagtgcctggcaac
cctggccaacatggtctaccaggcatcagtggtctccatggatgtcgtggagcaaagggt
cagaaaggagatgatggagccccgggtataactggctgcccaggacccacatcgaaccga
tgtgatccaggaaaacctggtacaatgggccagtcgggctttcgaggatctactggagcc
caaggtatttctggggataaaggggagatcggcaacgttggttctgaaggaattggcccc
aaaggctctgtgggtgcatcaggacttccaggtgtccgtggaaagcctggtggtcagggc
ctcccaggactcagtggaagctcaggacttcagggcactggtggtccaaaaggtctgact
ggaccctggggctgggagggagtgcctgggaaccctggaaagccgggggtccccggagat
ctgggcaggactggagagagagggttcaatggacgagatggtggtcaaggaatcgaaggg
ccaaaaggacagaaaggctttcaaggtccaacaggccctccaggaccaaccaactacatc
ctcattaaaggaaagagaggaaacccaggacatccctccactgttggatttactggacct
cgaggaagcaaaggtatgcagggagcagcaggcaagccagggcatccagggtgcgacgga
cccccgggcattgtaggaccccccgggccccctggaccctgtggcaaacaaggccctgtg
ggacccccaggactgaaggggtttgaaggatactgtggctttcccggaaacgttggagat
ccaggtgacaaaggatgcacagggaaacctggtgagcccggttccccaggatgtaaaggt
cccaaaggtaataaaggggagtctattggttgccctggtccaaatggagaaagggggcct
cgtggagacaagggacacctaggacctcctggatctcctggagatctgggagggttgggt
tttactggggctccaggagagaaaggatgcagaggagagaagggacactgtggaagcatc
ggtcctagaggtgtgattgggcccccaggtcccaggggtcaaccaggtactccaggtatt
caaggtaaatgtgggggtgatggtcctccaggacacgaaggctgccgaggacttaaaggc
cctcctggaccgctgggacttcatggactggacggactgaaaggagagaagggggccatt
gggaccagaggtcggggctttccaggtgtcaaaggttccttgggtccaccaggagataaa
ggccctccaggacatcaaggtctttgcggtacatctcaacctggaccaccaggatacaaa
ggccccttcggacccaaagggcctccaggtaaatgtggacctccaggtaaacctggacca
gactgcaaaactcctatcaaagggccctgtggagatcctggctgtccaggcccagatgga
gagccagggaatcttggtgagataggggatcctggtcaaaaccccccaattcgtggggat
attggggacaatggtaacgtgggatgccaagggccaaagggaccaagaggatgcccagga
catataggaacacaaggttgcaccggatacccaggacaaaaaggtatgagaggcgatact
ggtttgttgggaatacctggccctcgaggttgtaagggtgttcctggtcactgtggatct
ccaggacttcctggacctcctggagttcatggaccaaaaggggaaaagggtgacacctta
gatcctgcactcatatcacctccaaagggtcctcctggagaaactggctcaactggtcaa
tttggacatcctggcctgaatggagaacaaggcccatgtggtcctaaaggtgataaagga
gattatggacctcagggatgtaaaggctgtgatggaccccctggtctaaaaggagacaaa
ggagagccaggcctgccaggagagagtggagtagtgggacagaaaggtaaccgtggtcca
gaaggtgaaaagggttctcacggaccaaccaaagaattgaacttgggcttgttggtggtg
cacagtcaaagtgcaaacactcccaggtgtccaggcaacatgaacaccctgtgggaagga
ttcagtctgctgtatctggaaggccaggagcgggcacacacccaggacttgggtcagccg
gggtcgtgcatgcgtgtcttttccaccttgcccttcgctccatgtaacaagcatacttgc
tcttacgccagtcgtaatgataaatcctattggctaacgacgatggagcctgtcccacgt
gaacacgtgagtggagtcaacatcaaaaagtacatcagccgctgcgtggtgtgtgaagcc
ccatccctacccatcgcagtacacagccagtccagtcagtctgtggagtgtcccgaaaac
tggacagaactgtgggacggatactccttcgtcatgcataccggtgcaggtgatgaaggt
ggcggccagcctctgacatcatcaggtagctgtctgaaagcatacaaggcccagccattc
gtggagtgtcaggggcctcgtggaacctgccacttcttcgccaacatgtacagtttctgg
ctgaccaccctgaccgacccggcgatgctgaccaatgaccaagagcagaggaggagcatt
gcaaagtgcaaagtctgcatgaggctgtga |
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