Oreochromis niloticus (Nile tilapia): 100700995
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Entry
100700995 CDS
T06104
Symbol
pan3
Name
(RefSeq) PAN2-PAN3 deadenylation complex subunit PAN3 isoform X1
KO
K12572
PAB-dependent poly(A)-specific ribonuclease subunit 3
Organism
onl
Oreochromis niloticus (Nile tilapia)
Pathway
onl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
onl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100700995 (pan3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
onl03019
]
100700995 (pan3)
Messenger RNA biogenesis [BR:
onl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
100700995 (pan3)
mRNA degradation factors
3'-5' decay
Pan complex
100700995 (pan3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pan3_PK
zf-CCCH
zf-CCCH_4
zf_CCCH_4
Torus
Pkinase
zf-CCCH_2
Motif
Other DBs
NCBI-GeneID:
100700995
NCBI-ProteinID:
XP_003443597
Ensembl:
ENSONIG00000014139
LinkDB
All DBs
Position
LG9:19006530..19029394
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AA seq
793 aa
AA seq
DB search
MNSGLSPSAAPLGGAGIPNVKVKFCRYYAKDKTCFYGDECQFLHEDPSLASLPLHGGGGS
PVPLSMAGGGGTQAGYSLGGSAAGCPGGGGTGVPKKSETLGPANTSLEGQLLTIPGMEGA
TLSDANLTNSYFSSSFIGVNGFGSPAEPKYSMMQRMTTSSSSPSLLNDGAKNFSHSTHDP
VNSPTSSLFSDFGALSISQRRKAPNPAASEFIPKGAPRMANMAQSTVQAFPSPLFAHPGL
SGSTAAALAPGMSLSAGSSPLHSPKITPHTSPAPRRRSHTPNPANYMVPTTASDQGAHII
QKETVGGTTYFYTDNTPAPMAGMVFPTYHIYPPTAPHVAYMQPKANAPSFFMADELRQEL
INRHLITMAQIDHSENPDVPSEVDSYHSLFPLEPLPPPNRMQKTSNFSYITSCYKAVNSK
DDLPYCLRRIHGFRLVNTKCMMLVDMWKKIQHSNTVTLREVFTTKAFGDHSLVFSYDFHA
GAETMFSRHFNDPAADSYFTKRKWGQHEPPPPRQHAGLLPESLIWAYIVQLSSALRTIHT
AGLACRVMDPSKILITGKTRLRVNCVGVFDVLTFDNSQTNHLALMPQYQQADLVSLGKVV
LALACNSLAGIQRENLQKAMELVSINYSSDLKNLILYLLTEQSRLRSVNDIMPMIGARFY
TQLDASQMRNDVIEEDLAKEVQNGRLFRLLAKLGTINERPEFQKDPTWSETGDRYLLKLF
RDHLFHQVTEAGTPWIDLSHIVSCLNKLDAGVPEKISLVSRDEKSVLVVTYSDLKRCFDS
TFQELQAAASGSL
NT seq
2382 nt
NT seq
+upstream
nt +downstream
nt
atgaacagtggactctcaccttcagctgctccgctcgggggtgccgggatacctaatgtc
aaggtgaagttttgtcgatactacgcaaaagacaaaacctgcttttatggagatgagtgt
cagttcttgcatgaggatccgtccttggcgagtttgccgctgcacggcggcggcggcagc
cctgtcccgttgtccatggccgggggtggtgggacgcaagcggggtattcccttggcggc
tccgcggcgggctgcccgggcggtgggggcaccggcgtgcccaagaagagtgaaacattg
gggcctgcgaatacgtctctggaggggcagctgttaaccatcccagggatggaaggtgca
accctgagcgatgccaatcttaccaactcttacttcagcagcagctttattggggtcaat
ggatttggaagtccagcagagcctaaatactcaatgatgcagcgaatgactaccagcagc
agctctcccagtcttctcaacgatggtgccaagaacttcagccacagcactcatgatcca
gtgaactccccgacatcctcactgttcagtgattttggtgctcttagcatttcccaaagg
agaaaggctcctaacccggcagcgagtgaattcatccctaagggagctccacgtatggcc
aatatggctcagtccactgtccaggccttcccctcacctctctttgcacatcctggtctc
agcggctccacagctgctgccctggctccaggaatgtcgttgtctgcgggatcttctcct
cttcactcacctaaaattacaccacacacctcacctgctccccgtcgacgcagtcacacc
ccaaaccctgccaactacatggtgcccaccactgcgtctgaccagggtgcacacattatc
cagaaagagactgtaggggggacgacctacttttacacagacaacaccccggcaccaatg
gctgggatggtgtttcctacctaccatatctatccacccacggcgccacatgtggcttac
atgcagccgaaagccaatgccccgtccttcttcatggctgatgagcttcgacaggagttg
ataaacagacatctaataaccatggcccaaattgaccactcagaaaatccagatgtacca
tctgaggtggacagctatcacagcctgtttcccctcgagccccttcccccaccaaaccgc
atgcagaagaccagcaacttcagctacatcacctcgtgctacaaggcagtgaatagcaaa
gatgacctaccgtactgcctgaggaggatacatggtttccgcctcgttaacacaaagtgc
atgatgctggtggacatgtggaagaagattcagcactcaaacactgtaacattgagagag
gtcttcaccaccaaggcctttggagaccactctttggtgttctcgtatgatttccatgca
ggtgcagaaaccatgttcagcagacactttaatgacccagcagcagactcgtacttcacc
aaaaggaaatggggacaacatgaaccccctccaccacggcagcatgcgggtctgctccca
gaatccctcatctgggcatacatcgtccagctcagctcagccctgcgcaccatccacacg
gcgggcctggcttgccgtgtgatggaccccagcaaaattctcatcactggcaagaccagg
ttacgggtgaactgtgttggggtgtttgacgtcttaacatttgacaacagtcagaccaat
catcttgcccttatgccacagtaccagcaagcagatctcgtgtcactgggcaaggttgtg
ctggctttggcatgcaactccctggctggcatacaaagggagaacctgcagaaggccatg
gagctggtgtctatcaactactcttcagacctcaagaacctcattctgtatctgctgacc
gaacagtctcgcctgcgcagcgtcaatgacatcatgccgatgattggagccagattctac
acacaactggacgcatcgcagatgaggaatgacgtcattgaggaggatctggccaaggag
gtgcaaaatggccgactctttcgcctgctggccaagctgggcaccataaatgaacgtcca
gaattccaaaaggacccaacgtggtcagaaacgggcgaccgctacctgttgaagcttttc
cgagaccacctgtttcaccaggtgacagaagccgggacgccctggattgacctcagccac
atcgtctcctgcctcaacaaactggacgcgggcgttcctgagaagatcagcctggtgtct
cgggacgagaaaagtgtcctggttgtgacctactcggacctgaagcgctgctttgacagt
accttccaggagctgcaggccgctgcatccggctctctgtag
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