Oreochromis niloticus (Nile tilapia): 100701666
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Entry
100701666 CDS
T06104
Symbol
pcf11
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA cleavage complex 2 protein Pcf11
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
onl
Oreochromis niloticus (Nile tilapia)
Pathway
onl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
onl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100701666 (pcf11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
onl03021
]
100701666 (pcf11)
03019 Messenger RNA biogenesis [BR:
onl03019
]
100701666 (pcf11)
Transcription machinery [BR:
onl03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
100701666 (pcf11)
Messenger RNA biogenesis [BR:
onl03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
100701666 (pcf11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
Motif
Other DBs
NCBI-GeneID:
100701666
NCBI-ProteinID:
XP_005457407
LinkDB
All DBs
Position
LG10:32691721..32702955
Genome browser
AA seq
1559 aa
AA seq
DB search
MDCLLISGYGFGKTRLGLAECLSSKMDDSAAREDACREYQSSLEDLTFNSKPHINMLTIL
AEENINFAKDIVEIIEAQISKAPPSEKLPVLYLVDSIVKNVGGEYLAVFAKNLIPSFICV
FEKVDENTRKSLFKLRSTWDDVFPPKKLYALDVKVNSVDPAWPIKPLPPTINASIHVNPK
FLKQPEESSSSPRPTPAQPPPTPPPAPQPVPAAISQSSLTQEQLIRQQLLAKQKQLLELQ
QKKIELELEQTKAQLASGFTLPAATAVSTSSAASLVPKLISQPAPVVRPWVPSQSDSKAS
VRDPRLNRPPTGPPPVDQPATTKREPPPTTGSHSLALEKARMQKKDAPQEKPKSKSPSPM
AKSGPSKTKAAEAVLQSKDGTKKDPRLRKRTQDKLGEGKDSEQKEKKRCSDEKEREDAAR
GAEPQRFKGKLVNGSVAKHERDKASDKTAGNARTHARKRTRSRSRSRSPAGSPKRKDRRS
PKGRARSSSPSPLHKAGKPRRLELLHGKPSREDRPTPKNQSESRRSKRPGEERHSETRDS
HSPRSHEGGCKEVKDAPHRWRSGWEESKHMKLSDDMHAKPTPQRHKLYSTPNRPSIPRTP
KHRLSVDANLQIPDVLNSASKKDLLRRASKRMESGEISREEFLNMAHQIKQLYQYQEEIQ
QRKDSWDESDFPVKKQPPLLSTPSSQPRPHEGMDAAELSYYEHKSKLRKTQVNHRPAGEE
WEGEENPETSDKPGHSEKMGGGQSAGHPPPHKYNRAPRDRPGERRSKECEEQRAPLAPMV
EEYNHGKEFPALKPGLRFMKRDHRETKRSEVRFWSSRVSGCRSGILQQGEREWTSPLTER
QHYNDREEQKSSYNVPRRYGPPADPRRPEVPPPSGTVVHRNSPSPAGLDATATRFERERL
SPLQKDSADMSPIPRFESPNSEHSDDGPLDAPPPHASTKSILKAPHARGVPQSSVRQHGG
SPGHTPPHDGGHPPARYNGPGHMGSSRPHPPGWYEGGGGSGRFDDSLQCEGPHHPAPAGS
RAPDHPIRPWRSGWTVPDTXVTVRXEAENEWGGLRAPLRSLEGLGLLSDYRHDLRAGAGP
LGGPTAALRSTTSLKQHGSRPWIRPHGLPAATRPLRGPMRIDGTGHFEGPGQPGPRYDVP
HQGGPPRFEHFPGQGHLRFEPQHNLQPLMRQMGPPMYESPMAPQQNFHMPPQRFPDPINP
QFPAAPAGFPAQQNMQQAGNFHAQPFSQPGPTPFYNPAAPAIGLQQPVSVMGTMAQPFLP
QTAVPFGQQNPQVVPAENHLGQVDVNDLLSKLLSTGIIKPSQPDATPASSSESSSAPPPA
LPPEEEEEEEQEVEGEGEDDVPDLTSFSIDDMKQRYESVVTKLYSGNQCCLCSMRFTATQ
TDMYADHLDWHFRQNHAGKVASKKVTHRRWYYSLTDWIEFEEIADLEERAKSQFFEKENE
EEVQKSQAAAKEKEFQSVRATKDQVGESCEICQEPFETYWVEEEEDWFLKNAIKVDDKNF
HPSCFEDYKNTSSYVDVTPSPSKLLTDHPLGAFVKTEESRRRSLPVLSLPLLLLLPPPQ
NT seq
4680 nt
NT seq
+upstream
nt +downstream
nt
atggactgcctgctgatcagtggttatggtttcggtaagactcgcttaggtttggccgag
tgtctcagctcaaagatggacgacagcgcggcgagggaagacgcctgccgggagtaccag
tcctccctcgaagacctgacgtttaacagcaagccgcacatcaacatgctgaccatcctg
gccgaggaaaacatcaacttcgccaaggatatcgtggaaattattgaagcacaaataagc
aaggccccacccagcgagaagcttccagttttgtacttagtggattccatagtgaagaat
gttggaggagaataccttgcagtgtttgctaaaaacctaatcccttcatttatatgtgtc
tttgaaaaggtggacgaaaacactagaaagtccctgttcaagctgcgttccacctgggac
gacgtgttcccgcccaagaagctgtacgcgctcgacgtgaaggtcaactctgtggacccg
gcgtggcccatcaagccgctgccgcccaccatcaacgccagcatccacgtcaaccccaag
ttcctcaaacagcctgaggagtcttcatcctctcccaggccgaccccggcccagccgccg
cccacgcccccacccgcccctcaaccggtccccgcagccatcagtcagtccagcctgaca
caggagcagctgatccggcagcagctgctggccaaacagaagcagctcctggagctccag
cagaagaagatcgagctggagctggagcagacaaaagctcagctggccagcggcttcaca
ttaccagcagcgacggcggtctccacttcatcagcagcgagcctggtgcccaagctcatc
agccaacctgctcccgtggtccgaccctgggtaccctctcagagtgattcaaaggcgtcc
gtcagagacccccggctgaatcgcccgcccactggccccccacctgtagaccagcccgcc
acaacaaaaagagagcctccacccaccacaggaagccactctctcgctctggagaaagcc
aggatgcagaagaaagacgctccacaagagaaacccaaatccaagtcaccgtctccaatg
gcgaagagcgggccgagtaaaacgaaagcagcggaggcggtgcttcagagcaaagatggc
acgaagaaagacccgcggctgaggaaacgcacgcaggacaagttgggcgagggcaaggac
agcgagcaaaaagagaagaagcgatgcagtgatgagaaggagcgggaggatgctgcacgg
ggggcagagcctcagaggttcaaaggtaaactggtgaacggttcggtcgccaaacatgag
cgtgacaaggcctctgataagaccgccggcaacgcccgaacgcacgcaaggaagcgcact
cgctcacggtccaggtcgcgatcacctgccggctccccaaagaggaaggacaggcgctcg
ccaaagggtagagcccgcagcagctcaccgtcacctttgcataaagctggaaaaccacgg
aggcttgaactcctgcacggcaagcccagtcgggaggaccgtcccactcccaaaaaccaa
tcagagagcaggaggtccaagagacccggggaggaacgccactctgagaccagagactct
cactcgccacgcagccacgagggaggctgcaaggaggtgaaggacgcacctcaccgctgg
aggagcggctgggaggagagtaaacacatgaagctgtcggacgacatgcacgccaagccc
acgcctcagagacataaactgtacagcacgccgaaccgccccagcatcccccgaaccccg
aagcaccggctcagtgtcgacgccaacctgcagatccccgatgtcctgaactccgcctcc
aagaaggacctgctgaggagggcgagcaagcgcatggagagtggcgagatctcccgcgag
gagttcctcaacatggctcaccagatcaaacagctgtaccagtatcaggaggagatccag
cagcgcaaagacagctgggacgaatcagacttccccgtcaagaagcagccaccgctgctg
agcactccctcatctcagccccgcccccacgaaggcatggatgcagcagagctgtcgtac
tacgagcacaagtcgaagctgaggaagactcaggtcaaccaccgacctgccggagaggag
tgggagggggaggagaatccggaaaccagtgacaaaccggggcacagcgagaagatgggt
ggtgggcagagcgccggacacccaccgccacataaatacaaccgagccccgcgagacagg
ccaggcgagaggcggagcaaagagtgtgaggagcaacgggcgccgctcgcccctatggtc
gaagagtacaaccacggcaaagagttcccagcgctgaagccgggtcttcgcttcatgaag
agagaccacagagagacaaagaggtcagaggtcaggttctggagcagcagggtgtcaggg
tgtcgatcagggatacttcagcagggtgagagagaatggacctcgccgctgaccgagcgc
cagcattacaacgaccgcgaggagcagaagagcagctacaatgttccacggcggtacggc
ccacctgctgacccccgcaggccggaggtgccccctccctcgggcaccgtggtccacagg
aactccccgagcccagctggcctggacgccacggcgacacgctttgagcgcgaacggctg
tcaccgttacagaaggactctgctgacatgagcccgataccgcgctttgagagcccaaac
agtgagcactcggacgacgggcccctggatgccccgcctcctcacgcttcaaccaaatcc
atcctgaaggcgccacacgcccgcggagtgccgcaatcttctgtccgacagcacggcggg
tcacccggacacacgccacctcacgacggcggacatccccctgcacgctacaacggtccc
ggtcatatgggctcctctaggccccaccccccaggatggtatgaaggcggcggtggctcc
ggacggttcgatgactcactgcagtgtgaggggcctcaccacccagccccggcaggttcg
agggcgccggaccaccccatcagaccatggcggagcgggtggacggtcccggacacatga
gtcacggtccgatgagaggcggagaacgaatggggcggtttgagggcccccctcaggtcc
ctggaaggtttggggctcctgtcggactacagacacgatttgagggccggggccgggcca
ctcggagggcccactgcagcgcttcgaagcaccacgtcacttaaacaacatgggtcccgg
ccctggatccgcccccatgggcttccagcagcgacccgcccgcttcgagggcccatgagg
attgacggcaccggacacttcgaggggccgggccagccggggccccggtatgacgtgccg
catcagggaggcccaccgcgcttcgagcacttccccggacagggccacctgcgattcgaa
cctcaacacaacctgcagcccctcatgaggcagatgggcccgcccatgtatgaaagcccc
atggccccgcagcagaacttccacatgccaccccagcgtttcccggaccccatcaatcct
cagttccctgcggcaccagcggggttcccggcgcaacagaacatgcagcaggccggaaac
ttccatgcgcagccgttcagtcagccaggacccacccccttctacaaccctgcagcaccc
gccattggcttacagcagccggtgagcgtgatgggaaccatggcccagcccttcctacct
cagaccgccgtgcctttcggacagcagaatccgcaggtcgtccctgcggagaaccatttg
ggtcaggtggacgtgaacgacctgctgtccaagctcctctccactggcatcatcaaaccc
tcgcagcccgatgccacgcccgcctccagcagcgaatcgtcttctgcgcctccgccggca
ctgccaccagaggaggaggaagaggaggagcaggaggtggagggtgagggcgaggacgac
gtgccggacctcaccagcttcagcatcgatgacatgaaacagcgctacgagagcgtggtg
acgaagctgtactcagggaaccagtgctgcctgtgcagcatgcgcttcaccgccacccag
accgacatgtacgccgaccacctggactggcacttcaggcagaaccatgccggcaaggtg
gcgagcaagaaggtcacgcaccgccgctggtactacagccttacggactggatcgagttc
gaggagatcgcagacctggaggagcgcgccaagagccagttcttcgagaaggagaacgag
gaggaggtgcagaagagccaggcggccgccaaggagaaggagttccagagcgtgagagcc
accaaggaccaggtgggagagagctgtgagatctgtcaggagccctttgagacgtactgg
gtggaggaggaggaggactggttcctgaagaacgccatcaaggttgatgacaagaacttc
cacccctcctgcttcgaggattacaagaacacatcctcgtatgttgacgtcacgccgtcg
cccagtaagctgctgaccgatcacccgctgggcgcctttgtgaagacagaagaaagcagg
aggaggtcgcttcctgtgctgtcgctgccgctgctgctgctgctgccaccacctcagtga
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integrated database retrieval system
