Oreochromis niloticus (Nile tilapia): 100703195 Help Entry 100703195         CDS       T06104                                  Symbol htt Name (RefSeq) huntingtin isoform X4   KO K04533   huntingtin Organism onl  Oreochromis niloticus (Nile tilapia) Brite KEGG Orthology (KO) [BR:onl00001]  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:onl03019]     100703195 (htt)    04131 Membrane trafficking [BR:onl04131]     100703195 (htt)    03029 Mitochondrial biogenesis [BR:onl03029]     100703195 (htt) Messenger RNA biogenesis [BR:onl03019]  Eukaryotic type   mRNA surveillance and transport factors    mRNA cycle factors     Common to processing body (P body) and stress granule      100703195 (htt) Membrane trafficking [BR:onl04131]  Endocytosis   Rab GTPases and associated proteins    Rab associated proteins     100703195 (htt) Mitochondrial biogenesis [BR:onl03029]  Mitochondrial quality control factors   Regulator of mitochondrial biogenesis    Other regulator of mitochondrial biogenesis     100703195 (htt) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Htt_C-HEAT Htt_N-HEAT Htt_bridge Htt_N-HEAT_1 HEAT Vac14_Fab1_bd DUF6406 Motif Other DBs NCBI-GeneID:  100703195 NCBI-ProteinID:  XP_005458637 Ensembl:  ENSONIG00000018930 LinkDB All DBs Position LG6:34427716..34458977 Genome browser AA seq 3156 aa AA seqDB search MATMEKLMKAFESLKSFQQQQGPPTAEELAQRQKKEQAATKKDRVTHCLTICENIVAQSL RTSPEFQKLLGIAMEMFLLCSDDSESDVRMVADECLNKIIKALMDSNLPRLQLELYKEIK KNGASRSLRAALWRFAELAHLIRPQKCRPYLVNLLPCLTRITKRQEETVQETLATAMPKI MSALGHFANDGEIKVLLKAFVANLKSSSPTIRRTAASSAVSICQHSRRTSYFYTWLLNVL LGLLVPVDDEHPSHLILGVLLTLRYLMPLLQQHVNSTSLKGSFGVMRKEADVQPTPEQLL QVYELTLHYTQHWDHNVVTAALELLQQVFRTPPPELLHMLITAGSIPHATVFRQDTENRS RSGSILEFIAGGGSSCSPLLLRKQRGKMLSGEEDGLEDDPERTEVTTAAFTASVVGTDSS SAAQVDIITEQPRSSQHALQPGDSVDLSASSEQGGGGAGTSTSGTPESPNDNDEEMLSRS SSGGANVTPETADYTTPENATPEGGPLGESGTLLGTNDRSLPPSDSSQTTTEGPDSAVTP SDVAELVLDGSESQYSGMQIGTLQDEEDEGTAPSSQEEPQEPFLQSALALSKPHLFDGRG HNRQGSDSSVDRFIPKDEPAEPEPDNKPSRIKGPIGHYTDQGAEPLVHCVRLLAASFLLT GQKNGLIPDKEVRVSVKALALSCVGAAAALHPEAFFNSLYLEPLDGVPVVEQQYISDVLG LIDHGDPQIRGATAILCAAIIQAALTKTRFNIHTWLASVQSATGNPLSLVDLVPLLQKTL KDESSVTCKMACSAVRHCITTICSSTLSELGLQLVIDLFALKDSSYWLVRTELLETLAEL DFRLVNFLERKTETLHKGDHHYTGRLRLQDRVLNDVVVYLLGDDDPRVRHVAASAVSRLV SRLFYDCDQGQVDPVVAIARDQSSVYLQLLMHETQPPSQFTVSTITRTYRGYSMSNTVSD VTLENNLSRVVAAVSHALTSSTSRALTFGCCEALCLLASNFPVGNWSTGWHCGYVSSNSN FSSRSSLNRSRGRTLSLSQPSSAPASSTTSSAPDAERRTLTVGIANTVLSLLSSAWFPLD LSAHQDALLLSGNLIAAVAPKCMRNPWVGEEEGSSGTSSGGPSKLEEPWAALSERSLVVM VEQLFSHLLKVLNICAHVLDDTPPGPAMKATLPSLSNTPSLSPIRRKGKEKEGAEPSATP MSPKKGSEANTGRPTDSTGSTTVNKSTTLGNFYHLPPYLKLYDVLKATHANYKVTLDLHS SQEKFGSFLRATLDVLSQLLELATLHDIGKCVEEILGYLKSCFSREPTMATVCVQQLLKT LFGTNLASQYEGVLSGPSRSQGKALRLGSSSLRPGLYHYCFMAPYTHFTQALADASLRNM VQAEQEQDTSGWFDVMQKASNQLRSNITNAARHRGDKNAIHNHIRLFEPLVIKALKQYTT STSVALQRQVLDLLAQLVQLRVNYCLLDSDQVFIGFVLKQFEYIEVGQFRDSEAIIPNIF FFLVLLSYERYHSKQIISIPKIIQLCDGIMASGRKAVTHAIPALQPIVHDLFVLRGSNKA DAGKELDTQKEVVVSMLLRLVQYHQVLEMFILVLQQCHKENEDKWKRLSRQIADVILPMI AKQQMHLDSPEALGVLNTLFETVAPSSLRPVDMLLKSMFTIPATMASVATVQLWVSGILA VLRVLVSQSTEDIVLSRVHELALSPNLLSCHAIRRLHQHSPSPNDPPAADTICKQETNGE TQKAPPEETFARFLLQLVGVLLDDISTRQVKVEITEQQHTFYCQQLGTLLMCLIHVFKSG MFRRITAAASRLLKGESGQTATEANLFYPLEGLNSMVQCLITTHPSLVLLWCQVLLIINY TNYSWWAEVHQTPRRHSLSSTKLLSPHSSGEGEEDKPESQLAMVNREIVRRGAVILFCDY VCQNLHDSEHLTWLIVNHVRDLISLSHEPPVQDFISAVHRNSAASGLFIQAIQSRCDNLT TPTMLKKTLQCLEGIHLSQSGSLLMLYVDKLLNTPFRVLARMVDTLACRRVEMLLAETLQ NSIAQLPVEELDRIQEYLQNSGLAQRHQRFYSLLDRFRATVVDTSSPTPPVTSHPLDGDP PSAPELVIADKEWYVALVKSQCCLRGDVSLLEMTELLTKLPPADLFSVMSCKEFNLSLLC PCLSMGMQRLARGQGSLLLETALQVTLEQLAGVTGSLPAPHQSFLPPSQPQPYWDQLGDV YDEPGFYPRVLSLCRALSQYLLSVSQLPSSLHIPSDKEHLITTFTCTATEVVVWRLLQDR LPLSVDLQWALSCLCLALQQPCVWNKLSTPEYTTHTCSLIYCLRLIIVAVAVSPGDQLLH QEKKMAKGEKDDGDQVDAAHADHMCEWQACEIMAELVEGLPSILSLGHRRNSILPTFLTP TLRNIVISLSRLPLVNSYTRVPPLVWKLGWSPQPGGEFGTTLPEIPVDFLQEKDVFREFL YRINTLGWSSRTQFEETWATLLGVLVTQPITKDQEEDPQQEEDLERTQLNVLAVQAITSL VLSAMTLPTPGNPAVSCLEQQPRNKSLKALETRFGRKLAVIRGEVEREIQALVSKRDNVH TYHPYHAWDPVPSLSAASAAGTLISHEKLLLQINTEREMGNMEYKLGQVSIHSVWLGNNI TPLREEEWGEDEEDEADTPAPTSPPLSPINSRKHRAGVDIHSCSQFLLELYSQWLIPSSP SNRRTPTILISEVVRSLLAVSDLFTERNQFDMMFSTLMELQKHHPPEDEILNQYLVPAIC KAAAVLGMDKVIAEPVCRLLETTLRSTHLPSRMGALHGVLYVLECDLLDDTAKQLIPTVS EYLLSNLKAVAHCVNLHNQQHVLVMCAVAFYMMENYPLDVGAEFMAGIIQLCGVMVSASE DSTPSIIYHCVLRGLERLLLSEQLSRMDGEALVKLSVDRVNMPSPHRAMAALGLMLTCMY TGKEKASPASRPAHSDPQAPDSESIIVAMERVSVLFDRIRKGLPSEARVVSRILPQFLDD FFPPQDVMNKVIGEFLSNQQPYPQFMATVVYKVFQTLHATGQSSMVRDWVLLSLSNFTQR TPVAMAMWSLSCFFVSASTSQWISALLPHVISRMGSSEVVDVNLFCLVAMDFYRHQIDEE LDRRAFQSVFETVASPGSPYYQLLGCLQSVHQDTSL NT seq 9471 nt NT seq  +upstreamnt  +downstreamnt atggccaccatggagaaattgatgaaggcctttgagtctctgaagtcattccagcagcag cagggaccaccgaccgccgaggagctcgctcagaggcaaaaaaaggagcaagctgccaca aagaaggacagggtgacccactgtctgacaatatgtgaaaacattgtggctcagtcactg agaacatctccagagtttcagaaactgcttggcatcgccatggagatgttcctgctctgc agcgatgacagtgaatcagatgttcggatggtagccgatgagtgcctgaataaaataatc aaagcactgatggactccaacttgcctagactgcagctggaattgtacaaagaaattaaa aagaatggtgcctctcggagtctgagggcagctttatggaggtttgctgagcttgcccac ctcatcagaccgcagaaatgcagaccttacctggtcaacctgttgccgtgcctcaccaga atcacaaagcggcaggaagagactgtgcaggagacacttgctacagcaatgcccaagatc atgtccgccctgggacactttgccaatgatggtgaaatcaaggtgctgctgaaggcattt gtggctaatctgaagtccagctccccgaccattagacggacagcagccagttcagccgtt agtatttgccagcactccagacgcactagctacttctacacctggctccttaatgttctt ctgggtctgctggttccggtggatgatgaacatcccagccatctaatactgggggtgctg ctaacccttcgttacctgatgcctctgctgcagcagcatgtcaactccactagtcttaaa ggaagctttggtgtcatgagaaaggaagctgatgtacagccaacacccgaacagctgctg caggtgtatgagctaaccctacactatacacagcactgggatcacaatgtggtcacagct gctctggagctgctgcagcaggtcttcaggactcccccaccagagcttctgcacatgctc attactgctggtagcatcccacatgccaccgtttttcgtcaggacactgagaaccgctca cgttctggcagcatccttgaattcattgcggggggagggtcttcctgcagtccactcctt ctcaggaaacagagaggtaaaatgctctctggagaggaggatggcttggaggatgaccct gagaggactgaggtcactactgctgctttcacagcatcagttgttggtacagacagctca tctgcagcccaggtggacatcatcactgaacagcctcggtcttcccagcatgctctgcag cctggtgattctgtggacctcagtgcctcttcagaacagggcggtggcggagccgggaca tctacatcaggcactccagagtcgcccaatgacaatgatgaggaaatgctgagtcggagc tccagtggtggggcaaatgttaccccagagactgctgactacaccaccccagagaatgcg actccagagggagggcctctaggagaaagtgggacactgctaggcactaatgatcgctca cttccacccagcgactcctcccaaaccaccacagagggaccggactcagctgtcacccct tcggatgtagcagaactggtactggatggcagtgagagtcagtactctggaatgcaaatt ggaacactacaggatgaagaagatgaaggaacagcaccttcctcccaagaagaaccccaa gaaccattcctgcagtcagcacttgctcttagcaagcctcatctcttcgacggccgcggt cacaaccggcagggttcagacagcagtgtggaccgtttcataccaaaggatgaacctgct gaacccgagcccgataataagccatcacgtataaaaggtccaattgggcactatacagac cagggtgcggagcctctagtgcactgtgtccggcttcttgctgcttccttcctactaaca ggacaaaaaaatggcttgattcctgacaaagaggtgcgagtgagtgtgaaagccttggca ctcagctgtgttggagcagcggcagcgctgcatcccgaagccttctttaactccctctac ttggagccgctggacggcgttccagtagtagagcagcaatatattagtgatgtcctgggc ctcattgaccatggagacccccagattagaggagctacagctatcctatgtgcagccatc atacaggctgcgctcaccaaaacacgtttcaacatacacacttggctggccagtgtgcag agtgcaacaggtaacccactgtccctggtggacttggtgcctttgcttcagaagactttg aaagatgaatcctctgtcacctgcaagatggcttgctctgcagtgaggcactgcatcacg actatttgcagcagtaccctgagtgagcttggcctgcagctggtgattgacctctttgcg ctgaaggactcttcctattggcttgttcgcactgagctcttggaaactctggcagaatta gacttccgattagttaattttttggagaggaaaactgagactttacataaaggagatcat cactacactgggcggctgcggctgcaagacagagtcctgaatgatgtggtcgtatatctg ttgggagatgacgatccaagagtacggcacgtggctgcctctgcggtcagcagactagtt tccaggttgttctatgactgtgaccagggccaggtggatccagtggtagcaattgcccga gaccagagttcagtctatctgcagctgcttatgcatgagacacaacccccatcccagttc acagttagcacaatcacaaggacataccgaggctacagcatgtccaacactgtctctgat gtcacattggagaacaacttgtccagagtagttgctgctgtctcgcatgctttgacctcg tctacctccagagctctaacttttggctgctgtgaggccttgtgcctcctagcttcaaat tttccagtgggcaattggagcacaggctggcactgcggctatgttagctccaatagcaac ttttcatcccgttctagtcttaaccgcagtaggggcagaaccctcagtttatcacagcct agcagtgctccagcctcttcaaccacctcatctgcaccagatgcagagcggaggactctg actgtaggaattgccaacacagtgctctccttattgtcttctgcctggtttccactggat ctctctgcgcatcaggatgcactgttactttctggaaacctcatagctgctgtggctcct aaatgtatgcgtaatccctgggttggggaggaagaaggcagcagtgggaccagtagtgga ggcccaagtaaattggaggaaccctgggccgcgctatcagaacgctccctggtggtcatg gtggagcaactcttttcccatctgctgaaggtcctcaacatctgtgcccatgtgttggat gatacaccaccaggaccagcaatgaaggccactctcccctccctgagcaacaccccctcc ctcagtcccattcgtaggaaaggcaaggagaaggagggtgccgagcccagtgccacccct atgagcccaaagaagggtagtgaggccaacacaggcaggccaacagacagtacaggatca acaactgtaaacaaatcgaccacccttggcaacttctaccacctgcctccctacctcaag ctctatgatgtgctcaaagctacgcatgccaactataaggttacgttggaccttcacagt agtcaagaaaagtttggaagtttcctgcgtgctacattagatgttctttctcagctgctg gagttagccacacttcatgacatcgggaagtgtgtggaggaaattttgggctacctcaag tcctgcttctccagagaaccaaccatggccacagtttgtgtgcaacagctgttgaagaca ctatttgggaccaacctggcctcccagtatgagggtgtgttgagtggacccagccggtcc cagggcaaagctctacgtcttggctcttccagcttgcggccaggactctaccactactgc ttcatggctccatacactcactttacccaggctcttgctgatgcaagcctccgtaacatg gtgcaggctgaacaggagcaggatacctctggatggtttgatgtaatgcaaaaagcatcc aatcaactgagatccaacatcacaaatgcagcgcgccacagaggagacaagaatgccatt cataaccacattcgactgtttgagccgttggtgatcaaagctttgaagcagtataccacc agcacatctgtggcgctgcaaagacaagtactggacctgctcgctcagcttgtgcagctc agagtcaactactgcctgctagactcagaccaggtgtttattggctttgtcctgaaacag tttgagtacattgaagtggggcagttcagagattcagaggccatcattcccaacatcttt ttcttcctggtgctgctgtcttatgaacgctaccactccaagcagattatcagcattccc aagatcatccagctgtgtgatggcattatggcaagtggcagaaaagctgtcacacatgcc atcccagccttgcagcctatagttcatgatctgtttgtcttgaggggctcaaacaaagct gatgcaggcaaggagctggatacacagaaagaagttgtggtctccatgctgctaagactt gtgcagtaccatcaggtgttggagatgttcattcttgtactgcagcagtgtcacaaagag aatgaagacaagtggaagagattatccagacagattgcagacgtcatacttcccatgatt gccaagcagcagatgcatctggactctccagaggcattaggagtattaaacactctgttt gagacggtggcaccttcctctcttagacctgttgacatgctgctcaagagtatgttcacc atcccagctaccatggcatctgtagctacagtccagctgtgggtatctggtatcctggca gtgcttagggtactggtctcgcagtccactgaagacattgtgctttcccgtgtccatgag ctggcactctctccaaatctactctcttgccacgctatccgccgcctgcatcagcatagc ccctccccaaacgacccgcctgctgctgacacaatctgcaaacaggaaactaatggtgaa acgcaaaaggccccacctgaggaaacgtttgccagattccttctccagcttgtaggtgtg ttgttggatgacatttccaccaggcaggttaaagtggaaatcactgagcagcagcacacc ttctactgccagcagctgggcacgctgctcatgtgtctcatacacgtcttcaaaagtgga atgtttcgcaggatcacagctgcagccagccgtctcctgaagggtgagagtggacagaca gccacagaggccaacctcttctaccccttagaaggtctgaacagcatggtacagtgcctc atcaccacccacccatccctggtgctcctctggtgccaagttcttctcatcattaactac accaactactcttggtgggctgaggttcatcagacacccagacgacacagtctctcatcc acaaagctgctgagccctcattcctcaggggaaggtgaagaggacaagcctgagtcccag ttagcaatggttaacagagagattgtacgcaggggagctgtaatcctcttctgtgactat gtgtgtcagaatctccatgactcggagcatctaacctggctgattgtaaatcatgttcgt gacctcatcagcctttcccatgagccgccagtgcaggacttcatcagtgctgtccaccgc aactctgctgccagtggcctcttcatccaagccatccagtcccgctgtgacaacctcact actcctaccatgttgaaaaagaccttacagtgtttggaaggcatccaccttagtcagtct ggatctctactgatgctatatgttgacaagcttcttaatacaccctttcgagttttggct cgcatggtggacacactggcgtgtcgcagggtagagatgttgctggctgagaccttacag aacagcatagcacagcttcctgtggaggaactggataggatccaagaatacctccagaac agtggtttagctcagagacatcagaggttctactccctgctggacaggttcagagccact gttgttgacacaagcagccccactcctccagtgacatcacatcccttggacggggatcct ccctctgctcctgagttggtcattgcagacaaggagtggtatgtggccctggtgaagtct cagtgctgtcttcgtggagatgtttccctgttggagatgacagaacttcttaccaaacta cctcctgctgatctcttcagtgtcatgagctgcaaggagttcaatctaagccttctctgt ccatgcttgagtatgggaatgcagcggttggcacgcggtcaggggtcacttttgttggag acagcactgcaggtgacccttgaacaactagcaggggtcaccgggtcacttcctgcacct caccagtcctttctgccaccatcccaaccccagccctactgggaccagctgggtgatgtg tatgatgaaccagggttctaccccagagttttgtcactctgtagagcactatctcaatac ctgctaagtgtgagccagctcccttcttcactacatattccctcagacaaggagcacctc atcaccaccttcacctgcactgccactgaggttgtagtgtggcgtctgctccaggaccgg ctacccctgagcgtggacttgcagtgggcactttcttgcctgtgtctggcgttgcagcag ccctgcgtctggaacaagctctccaccccagagtacaccacccatacctgctccctcatt tactgccttcgccttattattgttgcagtggctgtgagtcctggtgaccagctgctgcat caagagaagaaaatggcaaaaggagaaaaagatgatggagaccaagtggatgcagcacat gctgaccacatgtgtgagtggcaagcatgtgagatcatggctgagctggtggagggcctg ccgagcatcctttcccttggtcatcgtagaaactccattttacctacttttctcacacca acattgcgcaacattgttatcagtctgtctcggcttcctctggtcaacagctacacccga gtacctccactggtttggaaactgggctggtcccctcagccaggaggagagttcggcaca acgctgcctgagatccccgtggacttccttcaggaaaaggatgtcttcagagagtttctt taccgtatcaatacattgggctggagcagtaggactcaatttgaggagacctgggctact ctactaggggtgctggtcacccaacccatcactaaagaccaggaggaggacccgcaacag gaggaggacttggagcgtacccagttgaatgtgttagcagtgcaagccatcaccagcctg gtgctgagtgccatgacccttcccactcctggcaacccagcagttagctgtctggaacag cagcctcgcaacaagagcctaaaagccctggaaacacggtttggaaggaaacttgcagtg attagaggtgaggtggagagagagattcaggcgcttgtgtcaaaaagggacaacgtccat acataccacccataccatgcctgggatcctgtgccctcactatcagcagcttctgcagca ggtacgctgatcagccatgagaaactgctgcttcaaatcaacacagagagggagatgggc aacatggaatacaaactggggcaggtctccatccattcagtgtggttgggtaacaacatc acgcctctcagggaggaagagtggggtgaggatgaagaagatgaggcagacactccggcg cccacctccccacctttatctcctataaactctagaaaacaccgtgcaggcgtggatatt cattcatgttctcagtttctcctggagctctacagccagtggctgatccctagctctcca agtaacaggagaaccccaaccatcctcatcagtgaagtggtccgatcgctgctggcagtg tcggatctgttcacagaaaggaaccagtttgatatgatgttctccaccctgatggagctg cagaagcaccatccaccagaggatgagatcttgaatcagtaccttgtgccggccatctgc aaggcggcagctgttttgggcatggacaaggtaatagccgagccggtgtgtcgccttttg gagacgaccctgcgcagcactcaccttcccagccgcatgggagccttgcatggggtgctg tatgtgttggaatgtgaccttctggatgacaccgctaaacagctcatccccacagtctct gagtaccttctatccaacctcaaggctgttgctcactgtgtgaacctgcataaccagcag catgtgttggtgatgtgtgcagtggctttctacatgatggagaactaccctctagatgtg ggagctgaatttatggctggaattatacagttatgtggcgtgatggtgtcagccagcgag gactccactccctccatcatctatcactgcgtgcttcgtggtctggagcgcctccttctg tcagagcagttgtcacggatggacggagaagcgctggtcaaactcagcgtggatagagtt aacatgccatcgccacacagagccatggctgccctaggcctcatgcttacctgcatgtat actggcaaggagaaagccagccctgccagccgccccgcccattctgaccctcaggcccca gacagcgagtcaatcattgttgccatggagagggtctctgtgctctttgacaggataagg aagggtttacccagtgaggctcgtgtggtgtccaggattctgccccagtttctagatgac ttctttccgccacaggacgtcatgaacaaggtcatcggagagttcctgtctaatcagcag ccttatccgcaattcatggcgacagtcgtctacaaggttttccagacactccacgctaca ggccagtcttctatggtgcgagactgggtgctcctgtcattgtccaacttcactcagagg acaccagtggccatggccatgtggagcctctcctgcttctttgtgtctgcttccacctcc cagtggatctcagcactactgccacatgtgatcagccgaatgggctccagtgaggtggtg gatgttaacctgttctgcctggtggccatggatttctaccggcatcagattgacgaggag ctggaccgcagagctttccagtcagtatttgagactgtagcctcgccaggcagcccttat taccagctgctgggctgtctgcagtcagtccatcaggatacatcactctga

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