Oreochromis niloticus (Nile tilapia): 100703384
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Entry
100703384 CDS
T06104
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit isoform X1
KO
K07466
replication factor A1
Organism
onl
Oreochromis niloticus (Nile tilapia)
Pathway
onl03030
DNA replication
onl03420
Nucleotide excision repair
onl03430
Mismatch repair
onl03440
Homologous recombination
onl03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
onl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
100703384
03420 Nucleotide excision repair
100703384
03430 Mismatch repair
100703384
03440 Homologous recombination
100703384
03460 Fanconi anemia pathway
100703384
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
onl03000
]
100703384
03032 DNA replication proteins [BR:
onl03032
]
100703384
03400 DNA repair and recombination proteins [BR:
onl03400
]
100703384
Transcription factors [BR:
onl03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
100703384
DNA replication proteins [BR:
onl03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
100703384
DNA repair and recombination proteins [BR:
onl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
100703384
MMR (mismatch excision repair)
100703384
DSBR (double strand breaks repair)
HR (homologous recombination)
100703384
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
Extensin_1
CATSPERD-E_C
IBR
Motif
Other DBs
NCBI-GeneID:
100703384
NCBI-ProteinID:
XP_003457593
Ensembl:
ENSONIG00000005602
UniProt:
A0A669B084
LinkDB
All DBs
Position
LG10:16854762..16896738
Genome browser
AA seq
665 aa
AA seq
DB search
MNVPLTKGAVEALCKGLDVDKPVLQLLNIRQISNASGPPRFRLMMSDGQHSLTSCLLATQ
LNYLSDENLLVPNCVCLLKKTVNNTLADGRRVVVVMDMDILKSAEEAGGKIGNPTPYNTD
GKMSSPQKVSSSTYVPESPPSAAVPGPSYRNYFSPRGRGGSFTGQAPMKASPMKASPMKA
SPMKASPMKASPMKASPMKASAIKASPSKGLTVKVSPMKASPMKANSASPGSSAKVIPIA
SLNPYQSKWTIRARVTNKSSIRTWSNSRGEGKLFSFEIVDESGEIRITAFNKEVDKFFSL
VEQGKVYYISKATLKPANKQYTTLKNDYEMTLHAHSSIVPCDDNQSIPTVHCDFVPIAEL
ENRDKDAIIDVIGICKSAEDVSRITTKNSREVSKRALSIIDQTGKVVTVTLWGEEAENFD
GSTQPVVAIKGARLSDFGGRSLSALFSSTVMVNPDIPQAFRLRAWYDREGFAINSQSLTE
TRSAGTGLNVNWKTLSDIKNEDMGHGEKAQYFSCVATVLYIRKENCLYQACPSADCNKKV
IDQQNGLYRCEKCNREFPNFKYRLLLSANLADFGDNQWVTCFQETAEALLGHSAETLGHL
RDTDEAAFDEVFQKANFTTHIFKNRVKLETYNDESRVKVTVMEVQPVDHREYSRRLLQNI
YKLAR
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atgaacgtacctcttacaaaaggggcggttgaagccctctgcaaaggcttagatgtggac
aagcccgtgctgcagctgctgaacatccgtcagatcagtaatgcctcaggcccacccaga
ttccgacttatgatgagtgatggccagcactctctgacttcttgcctgcttgctacccag
ttaaactatttatctgacgagaacctcctggtaccaaactgcgtgtgtttgttgaaaaag
accgtcaacaacactttggctgatggcaggcgtgtggttgttgttatggacatggatata
ttaaagtcagcagaggaagctgggggaaagattggaaatcccactccttataatacagat
ggtaagatgtcatctccacagaaggtgtcatcaagtacctatgttccagagtcccctccg
tctgctgccgtgcctggaccctcctataggaactacttctctccccgaggcagaggagga
agttttacgggacaagcacccatgaaagcttctcccatgaaagcttctcccatgaaagct
tctcccatgaaagcttctcccatgaaagcttctcccatgaaagcttctcccatgaaggcc
tcggctataaaagcatcacccagtaagggcttaaccgtgaaggtttcacccatgaaagct
tcgcccatgaaggccaacagcgcttctccgggttcttcagcaaaagtgattcctattgca
agcctcaacccctaccaaagcaagtggactatcagagccagagtcaccaacaagtcgagc
attcgcacgtggagtaactccagaggagagggcaagctcttctcctttgagatagtggat
gagagtggtgaaatcaggatcactgctttcaacaaggaagtggacaagtttttctctcta
gtggagcaaggcaaggtgtactacatctccaaggctacactcaagccggccaacaaacag
tacaccacgctgaagaacgactacgagatgaccctccacgctcactcatccatcgtgcca
tgtgatgacaatcagagcatccccacagtgcactgtgactttgtgcccatcgcagagctg
gaaaatcgagacaaagatgctatcattgatgtgattggaatatgtaagagtgctgaggat
gtatcccgtatcaccactaagaacagcagagaagtctccaagagggctctcagcataatc
gaccaaacaggcaaagtcgtgacagtcacactgtggggcgaagaggcagaaaattttgat
ggctctacgcagccagtggttgccatcaaaggagctcgattgtctgattttgggggaaga
tctctctctgcattgttcagttcaacagtcatggtcaacccagatataccacaggccttt
agactgagagcctggtatgaccgggaaggctttgcaatcaacagccagtcgctgacagag
accaggtcagcaggcacaggattaaacgtgaactggaaaacactgagcgacattaagaat
gaagacatgggccatggagagaaggcacagtatttcagctgcgtggcgacagtgctgtac
attcgtaaggagaattgtctgtaccaagcctgtccatctgcagactgcaacaagaaggtc
atcgaccagcagaatgggctgtaccgctgcgaaaagtgtaacagagagttccccaacttc
aaatacagactcttactttctgctaacttagctgacttcggggataaccagtgggtgacg
tgcttccaggagacagctgaggccctgttgggtcacagcgcagaaactctcggacatctc
agagacacagatgaagctgccttcgatgaagtcttccagaaagccaacttcacaactcac
atctttaaaaacagagtcaagctagagacctacaacgatgagagtcgagtgaaggtaact
gtaatggaagtccagccggtcgaccacagggaatacagccggagactcctgcaaaacatc
tacaaattggctagatga
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