Oreochromis niloticus (Nile tilapia): 100704151
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Entry
100704151 CDS
T06104
Symbol
nxf1
Name
(RefSeq) nuclear RNA export factor 1 isoform X1
KO
K14284
nuclear RNA export factor
Organism
onl
Oreochromis niloticus (Nile tilapia)
Pathway
onl03008
Ribosome biogenesis in eukaryotes
onl03013
Nucleocytoplasmic transport
onl03015
mRNA surveillance pathway
onl05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
onl00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
100704151 (nxf1)
03015 mRNA surveillance pathway
100704151 (nxf1)
03008 Ribosome biogenesis in eukaryotes
100704151 (nxf1)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
100704151 (nxf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
onl03019
]
100704151 (nxf1)
03009 Ribosome biogenesis [BR:
onl03009
]
100704151 (nxf1)
Messenger RNA biogenesis [BR:
onl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
100704151 (nxf1)
mRNA cycle factors
Stress granule specific factors
100704151 (nxf1)
Ribosome biogenesis [BR:
onl03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
100704151 (nxf1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LRR_NXF1-5
NXF_NTF2
Tap-RNA_bind
TAP_C
NTF2
LRR_4
LRR_8
LRR_9
RRM_NXF1-2
UBA_8
Citrulline_exp
LRR_SKP2
DUF8346
LRR_TMOD-LMOD
Motif
Other DBs
NCBI-GeneID:
100704151
NCBI-ProteinID:
XP_005467574
Ensembl:
ENSONIG00000005347
LinkDB
All DBs
Position
LG2:complement(20661416..20675866)
Genome browser
AA seq
663 aa
AA seq
DB search
MAAFHLWEVLVLCLVFSGTNNRNLRDFVVRREVRRTDFMVHGEHDDRTAPQFRNRKGRGP
HKGRYDRSRRDRQRGNHSGGFGGPGPRSRLDDTDGDVTMSDGSQDSSSQNRFNPYGRPFR
KGDGRFDRDRRQGKGGGRGGGGGPFRVGDRGGGGGKNQSGWYKVTIPHGRKYDKKWLLTA
LQNICSVTYTPVQYHVDHNRVHFYVDDSSVASALHKCSHKITDTDGYKVEVHVNKSGPPS
FLLSDLKPEHLEHLKQCMAKRFDGSQQALDLNNIRTDPDLVSQNIEVILNRKTNMEAVIK
IIEENIPELTSLNLSNNRIHKLDELAELVTKVPNLKTLNLSQNELKSDRELDKLKGLKLV
ELWLTRNPLCDVFKDQASYISAVRQRFPRLLRLDGHDLPPPIGFDVETPTTIPPCKGSCF
GSDEIKAVILRFLQQYYSIYDSGDRQPLLDAYHDGASLSITTPYSTQNPSRSSLGEYYKD
SRNLKRVKDSTIRFRLLKHTRLNVVAFLNELPKTQHDIASFTIDVNTYTNTLLSFTVSGV
FKEVVVDGKSRESTMAFSRVFITVPAGNSGLCIVNDQLFIRMATTEEIRRAFVAPAPTPS
SSPVPTLTAQQQEMLTAFSQKSGMNLEWSQKCLQDNEWDFSRAAHIFTQLKAEGKIPDVA
FIK
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atggctgcattccacttatgggaggtcctggttttatgcttggtgttcagtggcacaaac
aatagaaatcttagagactttgtcgtgaggagagaggtcagaagaaccgatttcatggtt
cacggagagcatgatgacagaaccgcaccacagtttcgcaaccgtaaaggcagaggccct
cacaagggtcggtatgacaggtctcgcagagaccgccagcgtggaaaccactcaggaggg
tttggaggtcctggaccacggtcgaggcttgacgatactgatggagatgtaactatgagt
gatggctctcaggacagcagctcccagaacagatttaacccatacggaagaccttttagg
aaaggagatggacggtttgacagagacaggcgacaaggcaaaggtggaggcagaggtgga
gggggtggtcccttcagagtaggagaccgaggtggcggaggagggaaaaaccaatcgggc
tggtacaaagtaacgataccacatggaagaaaatatgacaagaagtggctactcacagct
ctccagaacatttgttccgttacgtacacgcctgtacagtaccacgtggaccataacagg
gtccatttctatgtggatgactcctctgttgccagtgctttacacaagtgttcacataag
atcacagacaccgatggttataaggtcgaagtgcacgtcaacaaaagtggtccaccgtca
ttccttctctctgacctgaagcctgaacacctggagcacctgaagcaatgcatggcaaaa
cgttttgatggctcccagcaagcactcgacttgaacaacattcgaacagacccagacctg
gtgtcccaaaacattgaagtgatcctgaacaggaagactaacatggaagctgtcatcaag
atcattgaagaaaacattcctgagctgacgtccttaaacctgagtaacaaccgtattcac
aaactggatgaactagctgaattggttaccaaggtacccaatttgaagacgctcaatctt
tcccaaaatgagctaaagtctgatcgggagctggacaagttgaaaggcctgaagctggtg
gagctgtggctaactcgaaaccctttgtgtgacgtcttcaaggaccaggcctcatacatt
agtgctgtgcgccagaggtttccccggcttctcagactggatggtcatgacctccctcca
ccgattggatttgatgtggaaacgcccaccactattcccccctgcaagggcagctgtttt
ggctccgatgaaatcaaggcggtcatccttcggttcttgcaacagtactacagtatctat
gattcgggggatagacagccactcctggatgcctatcatgatggagcatcattatcaatc
acaacaccttactccacccagaacccctccaggagcagtctgggagagtattataaagac
agtcgaaacctgaagagagtcaaagactccacgatacgctttcgactgctgaagcataca
cgactgaacgtggtggctttcctcaacgagctaccaaagactcagcacgacatcgcctcc
tttacgattgatgtgaacacttacacgaatacactactgtcattcacagtgagtggagtt
tttaaagaagttgttgttgatgggaaatcgcgagaatccacaatggccttctctcgagtt
ttcatcacagtcccagcaggaaattctgggttgtgcattgtcaacgaccagcttttcatt
cgaatggccacaacagaggagatccgccgagcctttgtggctcctgccccgactccatct
tccagccctgtccccaccctcactgcacagcagcaagagatgctcacagctttctcacag
aagtctggcatgaacctggagtggtcacagaagtgtctacaagacaatgaatgggacttc
agcagagcagcgcatatctttactcagctgaaggctgaaggaaagattcctgatgtagct
ttcataaaataa
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