KEGG   Oreochromis niloticus (Nile tilapia): 100704243
Entry
100704243         CDS       T06104                                 
Symbol
rfc4
Name
(RefSeq) replication factor C subunit 4
  KO
K10755  replication factor C subunit 2/4
Organism
onl  Oreochromis niloticus (Nile tilapia)
Pathway
onl03030  DNA replication
onl03410  Base excision repair
onl03420  Nucleotide excision repair
onl03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:onl00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    100704243 (rfc4)
   03410 Base excision repair
    100704243 (rfc4)
   03420 Nucleotide excision repair
    100704243 (rfc4)
   03430 Mismatch repair
    100704243 (rfc4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:onl03032]
    100704243 (rfc4)
   03036 Chromosome and associated proteins [BR:onl03036]
    100704243 (rfc4)
   03400 DNA repair and recombination proteins [BR:onl03400]
    100704243 (rfc4)
DNA replication proteins [BR:onl03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    100704243 (rfc4)
  DNA Replication Termination Factors
   ELG1-RFC complex
    100704243 (rfc4)
Chromosome and associated proteins [BR:onl03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    100704243 (rfc4)
DNA repair and recombination proteins [BR:onl03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     100704243 (rfc4)
  Check point factors
   HRAD17(Rad24)-RFC complex
    100704243 (rfc4)
SSDB
Motif
Pfam: Rep_fac_C AAA RCF1-5-like_lid DNA_pol3_delta2 Rad17 AAA_assoc_2 AAA_16 AAA_22 AAA_11 AAA_30 AAA_24 Mg_chelatase DUF815 Gp44_lid RuvB_N SLFN-g3_helicase AAA_28 AAA_14 AAA_19 AAA_5 DNAX_ATPase_lid ResIII KH_DUF2096_C Cdc6_lid AAA_7
Other DBs
NCBI-GeneID: 100704243
NCBI-ProteinID: XP_005451167
Ensembl: ENSONIG00000019192
LinkDB
Position
LG23:complement(29299786..29306807)
AA seq 357 aa
MQAFLKGATVQAARPQKDKAVVGPSAEKKAKAVPWVEKYRPKCVDEVAFQEEVVAVLKKS
LEGADLPNLLFYGPPGTGKTSTILAAARELYGPELYRQRVLELNASDERGIQVVRDKVKN
FAQLTVAGTRPDGKSCPPFKIIILDEADSMTAPAQAALRRTMEKESRTTRFCLICNYISR
IIEPLTSRCSKFRFKPLANQIQEERLLEICEKENLKYTKESIAALVRVSEGDLRKAITFL
QSAARLNVDKEITDCAVIEIAGVVPDKMIDNLLQICFRGTFEKLEVAVRNMVDEGYAATQ
ILTQLHECVIEQDLSDKQKSTITEKMAVVCKCLSDGADEYLQLLSLCSVIMQEASHN
NT seq 1074 nt   +upstreamnt  +downstreamnt
atgcaagcctttttgaaaggagcaacagttcaggcagccaggcctcagaaagacaaggca
gtggttggacccagtgcagagaagaaagcaaaggctgttccttgggtagaaaaatacagg
ccaaagtgtgttgatgaggtggcctttcaggaggaggttgtagcggtgttgaagaagtct
ctggaaggagcagatcttcccaacttgctcttctatggccctcctggaacaggaaagacc
tctaccatcttagctgctgccagagaactttatggtccagaactgtacaggcagagggtg
ctggagctcaatgcctcagatgaaagaggcatccaggtcgtcagagataaagtcaaaaac
tttgctcagctcactgttgccgggacacgcccagacgggaagtcgtgtcctccttttaag
atcatcatactggatgaggccgattccatgactgcaccagctcaagctgctctcagacgg
acaatggagaaggagtctcgcacaactcggttttgtctcatctgtaactatataagcagg
attattgagcctctgacttctcggtgttccaagtttcgcttcaaacctctagccaatcag
atccaggaagaacgtctactagagatatgtgaaaaggagaacctcaagtacaccaaagag
agtatagcagcattggtgcgggtgtctgaaggcgacctgcggaaagccatcacatttttg
caaagtgctgcacgcctcaatgtcgacaaggaaatcactgattgtgctgttattgaaata
gcaggggttgttcctgacaagatgattgacaacctgctccagatctgcttcagaggaaca
tttgagaaactggaggtagcagtcaggaacatggtggatgaaggctacgcagccacacag
atcttgacacagcttcatgagtgtgtcatagagcaggacctgagtgacaagcagaagtcg
actatcacagagaagatggcagttgtgtgtaagtgtctgtcagatggtgcagacgagtac
ctgcagctgttgagtctgtgttcagtcatcatgcaggaggcttcccacaactaa

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