Oreochromis niloticus (Nile tilapia): 100704552
Help
Entry
100704552 CDS
T06104
Symbol
col13a1
Name
(RefSeq) collagen alpha-1(XIII) chain isoform X1
KO
K16617
collagen type XIII alpha
Organism
onl
Oreochromis niloticus (Nile tilapia)
Brite
KEGG Orthology (KO) [BR:
onl00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
onl00536
]
100704552 (col13a1)
Glycosaminoglycan binding proteins [BR:
onl00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100704552 (col13a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
100704552
NCBI-ProteinID:
XP_019222417
LinkDB
All DBs
Position
LG13:complement(34651058..>34733982)
Genome browser
AA seq
675 aa
AA seq
DB search
MSEMEQEKKWGVAGKPGEKRRIGLKQPLWRDLCCVAFCIAVSVLSVGVWIVVFVRTSELQ
SRIVSLEQQRLSAWMLSVEQVEPVILGRLDQILEEKLAARLPKTRDAREVSHSCLCPPGP
PGPPGRAGFPGGKGSMGIPGRTGLKGHAGEKGAPGEPGLSIIGPRGPPGQPGTRGFPGFP
GPIGLDGKPGQSGPKGDTGQRGPKGHPGEPGPKGEKGICGDYTHRGLFVQDLPLKTLAAL
RSSHTLLKMLPITVRNMPSISPLILKRLKQGEPGIQGPPGPPGPPGPPGTPGMDGANGPP
GKPGEPGKPGKDPRLLPGLKGEPGVPGQKGDRGDVGPTGPKGVRGDQGNKGEKGELNAGA
LGIKGEPGSPGLPGLRGPRGDKGSQGEKGEAGLQGPAGPRGLPGPTGEPGRAEILYENDI
RNIPLMGPPGLPGPPGTPGIPGAKGEVGLPGPPGLDGEKGPRGKPGEPGPPGPAGPEGPR
GEGGVMGFPGPKGTKGDMGPSGSPGPKGEPGDGGRLESIYGPPGPPGPPGPVGPAGPQGP
SGPKGEPGIGIRGEKGATGQKGDKGDRGHLGLPGAHGLDGRPGAVGLVGPAGVPGPAGPK
GETGEKGDPGIPGPTGPQGIPGLVGPQGLKGNQGERGKKGNRGAKGDKGDQGAPGLDAPC
PLGDDGLPVPGCWNK
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaaatggaacaggaaaagaagtggggagtcgctggtaaaccaggtgaaaagagg
cgcattggcttgaagcagccgctgtggagagatttgtgttgcgtggcattttgcatcgcg
gtgtccgtgctgtctgttggagtttggatcgtagtttttgtgcggacgtcggagctgcag
tccaggatagtaagtctggaacagcagcggctttctgcgtggatgctgtccgtggaacag
gtggagcctgtcatcctgggtcgtctcgaccagatcctggaagaaaagcttgcagcgcga
ctaccaaagacgcgggatgcaagagaagtttcccacagctgcctgtgtcccccaggacct
ccaggtcctcctggacgagcaggctttccgggtggcaaaggaagtatgggaattcctgga
agaacgggcttaaaaggacacgcaggggagaagggagcaccaggtgagcctggactgtct
atcattggaccaagaggacctcctggacaacctggtacaagaggatttccaggatttcca
ggtccaattgggttagatggcaagcctggacagagtggaccaaagggagacacgggacag
cgtggtcctaaaggacacccaggggaacctggacctaaaggggagaagggtatctgtggc
gattacacacatcggggtctctttgtgcaggatcttcctctgaaaaccctggctgcatta
cgatcaagtcatactctgttgaagatgttgcccatcaccgtgcgcaacatgccctcaata
agccctctaatattaaaacgcctcaagcagggcgagcctggaatacaggggcctccggga
cctccagggccacctggaccaccaggaacaccgggaatggatggggccaatggcccaccg
ggtaaacctggggagccaggcaaacctggaaaagatccaaggcttttgcccggactaaag
ggtgagccaggtgtgccaggacaaaagggggatcgaggtgatgttggcccaacaggccca
aagggagttaggggagaccaaggaaataagggagagaaaggagagctgaacgctggagcc
ctgggaattaaaggagagcctggttcaccaggactgccaggactaagaggacccagaggt
gacaaaggatcccagggagaaaaaggggaagcaggtcttcaaggcccagctggcccaaga
ggtctgccaggcccgactggggagccaggaagggctgaaatcctgtatgaaaatgatatc
cgcaacatccccctgatgggcccacctggattacctggacctccagggacacctggaatc
cctggagccaagggtgaagttggtctaccaggtccaccaggactggatggagagaaggga
cctcgagggaagcctggagaacctggtcccccgggcccagcaggtcctgaaggtcccaga
ggagagggaggtgtcatgggctttccaggacccaaaggcaccaagggtgacatgggtcca
tctggatcacctggtccaaaaggtgaacctggagatggaggaaggttagaatcgatctat
ggtcctccagggccaccaggacccccaggaccagttggcccagcaggaccacaaggacca
tcagggcctaagggagagccaggaattggaatccgaggagaaaagggagcgacaggtcag
aaaggcgacaagggagacagaggccatcttggacttcctggggctcatgggttagacggc
agaccaggtgcagtgggtctagtaggacctgcaggtgtgccagggccagcaggaccaaag
ggagagacaggtgaaaagggtgatcctggaatcccaggaccaacagggccacaaggcatc
cccggattagtaggaccacagggactcaagggaaatcagggagagaggggcaagaaaggc
aacaggggggccaaaggggataagggagaccaaggagcacctggattagatgccccctgt
ccattgggagatgatggtttacctgtacctggatgttggaataaatga
DBGET
integrated database retrieval system
