Oreochromis niloticus (Nile tilapia): 100705063
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Entry
100705063 CDS
T06104
Symbol
cstf1
Name
(RefSeq) cleavage stimulation factor subunit 1 isoform X1
KO
K14406
cleavage stimulation factor subunit 1
Organism
onl
Oreochromis niloticus (Nile tilapia)
Pathway
onl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
onl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100705063 (cstf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
onl03019
]
100705063 (cstf1)
Messenger RNA biogenesis [BR:
onl03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
100705063 (cstf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40
Beta-prop_THOC3
Beta-prop_WDR3_1st
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
WDR55
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_WDR3_2nd
CSTF1_dimer
WD40_Gbeta
Beta-prop_CAF1B_HIR1
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR90_POC16_2nd
EIF3I
Beta-prop_WDR36-Utp21_1st
Beta-prop_EML
ANAPC4_WD40
WD40_MABP1-WDR62_2nd
Beta-prop_RIG_2nd
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
Beta-prop_EIPR1
WDR90_beta-prop_4th
NBCH_WD40
Beta-prop_Aladin
Beta-prop_IFT122_1st
WD40_RFWD3
Beta-prop_SCAP
Beta-prop_DCAF4
Beta-prop_NUP159_NUP214
Beta-prop_NWD2_C
Beta-prop_IFT140_1st
Beta-prop_VPS8
Ge1_WD40
Beta-prop_SPT8
PROPPIN
Beta-prop_WDR11_1st
Frtz
Motif
Other DBs
NCBI-GeneID:
100705063
NCBI-ProteinID:
XP_013127605
Ensembl:
ENSONIG00000003227
UniProt:
I3J5B2
LinkDB
All DBs
Position
LG5:37113418..37123596
Genome browser
AA seq
431 aa
AA seq
DB search
MFRPKPTLKDRQHLYKLIISQLLYDGYTSIANSLINEVKPQSVVSPSEQLMQLAKIGMEN
DDSAVQYAIGRSDTVAPGVGIDLEFDADVQTMSPEASEYETCYVTSHKGPCRVATYSRDG
QLIATGSADASIKILDTERMLAKSAMPIEVMMNETAQQNMENHPVIRTLYDHVDEVTCLA
FHPTEQILASGSRDYTLKLFDYSKPSAKRAFKYIQEAEMLRSISFHPSGDFLLVGTQHPT
LRLYDVNTFQCFVSCNPLDQHTDTISGVSYNPTANSYVTCSKDGSIKLWDGVSNRCVTTF
EKAHDGAEVCSAIFSKNSKYILSSGKDSVVKLWEISTGRTLVKYTGAGLSGRQMHRTQGV
FNHTEDYVLLPDERTISLCCWDSRTAERKNLLSLGHNNIVRCIVHSPTNPGFMTCSDDFR
ARFWYRRTTTD
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atgtttcgtcccaaaccgactctgaaggaccgacagcacctgtacaagcttatcatcagc
cagctgctctacgatggatacactagcatcgccaacagtctcatcaatgaggtgaagcca
cagagcgttgtgtctccctctgagcagctcatgcagctggcaaagatagggatggaaaat
gacgatagtgccgttcagtatgcgatcggtcgctcagatactgtagccccgggtgttggc
atcgatctggaatttgacgcagacgtccagaccatgtctccagaggcgtcagagtatgag
acctgctacgtcacatctcacaagggcccttgccgcgttgctacatacagtcgagatggt
cagctgatcgctacaggctccgctgacgcctccatcaagatcctggatactgagcgcatg
ctggcgaagagtgccatgcccattgaggtgatgatgaatgagacggcgcagcaaaacatg
gagaatcaccctgtgattcggacgctgtacgaccacgtcgatgaagtcacctgcctcgcc
ttccatcccaccgaacagattctggcatctggctccagagattacaccctcaaactgttt
gactactccaagccctctgcaaaaagagcctttaaatatatacaggaagcagaaatgctg
cgttcaatctccttccacccctcaggtgacttcctgctagtggggacgcagcaccccacc
ctgcgcctctatgacgtcaacactttccagtgctttgtgtcttgcaacccactggaccag
cacacagacaccatcagcggggtcagctacaaccccacagctaatagctatgtcacctgc
agcaaggacggcagcatcaaactgtgggacggtgtctctaaccgctgcgtgacgaccttc
gagaaggcacacgacggagcggaggtgtgctccgccatcttctccaagaactccaagtac
atcctgtccagtgggaaagactcggtggtcaaactttgggagatctcaacaggccggact
ctggtcaagtacacaggcgcggggctgagcgggcgtcagatgcaccgtacgcagggcgtg
ttcaaccacacggaggactacgtgctgctgcccgacgagcgcaccatcagcctctgctgc
tgggactcccgcacagccgagaggaaaaacctgctgtctctgggtcacaataacattgtc
cgctgcatcgtccactcaccaaccaacccgggcttcatgacctgcagtgacgacttcagg
gcccgcttctggtaccgccgcaccaccacagactga
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