Oreochromis niloticus (Nile tilapia): 100705065
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Entry
100705065 CDS
T06104
Name
(RefSeq) LOW QUALITY PROTEIN: serine/arginine-rich splicing factor 1
KO
K12890
serine/arginine-rich splicing factor 1
Organism
onl
Oreochromis niloticus (Nile tilapia)
Pathway
onl03040
Spliceosome
onl05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
onl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100705065
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
100705065
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
onl03041
]
100705065
Spliceosome [BR:
onl03041
]
Common components
Common spliceosomal components
SR proteins
100705065
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_3
RRM_7
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
100705065
NCBI-ProteinID:
XP_003446870
UniProt:
I3JB75
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All DBs
Position
LG10:complement(13885038..13890383)
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AA seq
380 aa
AA seq
DB search
MSGGGVIRGPAGSNDCRIYVGNLPPDIRTKDVEDVFYKYGIIRDIDLKNRRGGPPFAFVE
FEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGGGRGGGGGALGTPRGRYGPPSRRSEY
RVIVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAIRKLDNTKFR
SHEGETAYIRVKMDGPRSPSYGRSPSRSXVVEAGATAGHAATPHTAAEDLLTTLPAAPAL
ALAPRRTSYDINQQLIPAARLRVETTDFTEQISVVSEWRRQTSQNRSPWTICWSSEEQDR
MGTEETVHIRISRRRRSQIWHQWFGLGSLSPHSGAGLGLGFRMDTWSRSMGAIYRERIPT
PDPVHITPSKWKHFIEIFKL
NT seq
1143 nt
NT seq
+upstream
nt +downstream
nt
atgtccggcggaggtgtgattagaggacctgcggggagcaacgactgtcggatatacgta
gggaatctccctcccgatatccgcaccaaagacgtggaggacgtgttttataaatacgga
atcattcgcgatattgacctgaaaaaccggagaggaggcccgccgtttgccttcgtagaa
tttgaggacccgagggatgcagaggatgctgtttatggacgtgatggttatgactatgat
ggctaccgtctgcgtgttgaattccctcgaagtggacgtggaggtggaaggggaggtggt
ggtggagctttaggaaccccaaggggacggtatggtcccccgtcacggcgctccgagtac
agggttatagtctcaggccttccccccagcgggagctggcaggacctgaaggatcacatg
cgggaggcaggtgatgtatgttatgctgatgtgtaccgtgatggcaccggcgtggtggag
tttgtacgcaaagaagacatgacctacgccatccgtaaattggataacaccaagtttcgc
tcccatgagggtgagacggcctacattcgcgtaaagatggacggccctcgcagccccagc
tacggtcgctcaccctctcgtagcnncgtagtcgaagccggagcaacagcgggtcacgca
gctactccccacaccgcagcagaggatctcctcactactctccccgccgctcccgctctt
gctctcgcacctagacgcacctcctatgacataaaccaacagctcatcccagccgctcgt
ctcagagtggagacgacagacttcacagaacagatctccgtcgtctcagagtggagacga
cagacttcacagaacagatctccatggaccatttgctggagttcagaggagcaggatagg
atgggaacagaggagactgttcatattaggataagcaggaggaggaggagtcagatatgg
caccaatggtttggactgggctcattgtctccccattccggagccggattaggattaggc
ttcaggatggatacatggagcaggagcatgggagcaatttaccgggagaggatcccgacc
cctgaccctgtccacataaccccatcaaagtggaaacattttatagaaatattcaaactt
taa
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