Oreochromis niloticus (Nile tilapia): 100705169
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Entry
100705169 CDS
T06104
Symbol
upf3a
Name
(RefSeq) regulator of nonsense transcripts 3A isoform X2
KO
K14328
regulator of nonsense transcripts 3
Organism
onl
Oreochromis niloticus (Nile tilapia)
Pathway
onl03013
Nucleocytoplasmic transport
onl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
onl00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
100705169 (upf3a)
03015 mRNA surveillance pathway
100705169 (upf3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
onl03019
]
100705169 (upf3a)
Messenger RNA biogenesis [BR:
onl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
100705169 (upf3a)
mRNA cycle factors
P-body specific factors
100705169 (upf3a)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
Motif
Other DBs
NCBI-GeneID:
100705169
NCBI-ProteinID:
XP_005475492
Ensembl:
ENSONIG00000006817
UniProt:
I3JIA9
LinkDB
All DBs
Position
LG16:23583642..23589371
Genome browser
AA seq
463 aa
AA seq
DB search
MRSEKDQMTAGKEKSVVEIQFRDIPREQENTSGNPKQKEEKKEVFTKVVIRRLPPNLSKE
QLEEQLSPLPSYDYFEFFPADQSLYPHLFSRAYINFKNPEDILLFRDRFDGYVFIDNKGQ
EYPAVVEFAPFQKISKKKLKKKDAKAGSIEEDPEYKRFLENYSCDEEKSMANPETLLGEI
EAKTKELIAKRTTPLLEYIKNKKIEKQRIREEKREERRRRELEKKRQREEEKRKRREEER
RKRKEAEKQKKLSDKDIKIKLLKKSDRDDDVDSDRMKDKSDTGEADRGKWEKTGGQIKSK
DPKDKGQPESDKEQREQHGRRQRDKDHRGKDEERKRQRHHYEFDKFMRRKDETKWGKGYC
QDRAKKEGHHHGYSYCPDSGDKIGKEEREDLGNRKERLRNKDRPAMQLYQPGARNRKRMS
SAGKGYDCIPVGHSPEPRTEHCYEVATMATGLEKGFEKSKDEQ
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgaggtctgaaaaggaccagatgaccgcgggcaaggagaaaagcgtcgtcgagatacag
tttagggacatcccaagagagcaggaaaacacttctggcaacccgaagcagaaagaagag
aagaaagaggtgtttacaaaggtggtgattcggaggctcccaccaaacctgtcaaaggag
cagctagaagagcaattgagtccactcccatcttatgactactttgagtttttcccagca
gatcaaagcctgtacccccacctgttctccagagcgtatatcaattttaaaaaccctgag
gatatcctgctgtttagggaccgatttgatggctatgtcttcatagacaacaaaggccaa
gagtatcctgcagttgtagagtttgctccctttcaaaagatttccaagaagaagctaaag
aaaaaagatgccaaagctgggagcattgaagaagatccagaatataagcggttcttggag
aattactcctgtgatgaggaaaagtctatggccaaccctgagacactgctaggagagata
gaggccaagaccaaagagctaatagccaaacggacgacaccgctgctggagtacatcaaa
aataagaaaattgagaaacagaggatacgagaggaaaagagagaggagagaagaagaaga
gagcttgaaaagaagcggcaaagggaggaggaaaagagaaagcggcgggaggaggagaga
cgcaagcgaaaagaagcagagaagcagaagaaattgtctgacaaagacattaaaattaag
ctccttaagaagagtgaccgggatgatgatgtggattcagaccgaatgaaggacaagagt
gacactggagaggcagacagaggcaaatgggagaaaaccggaggacaaataaagtcaaag
gaccccaaagacaaaggtcagcctgagagtgacaaggagcagcgagaacagcatgggcgc
aggcagagagataaggatcaccgtgggaaagatgaagagaggaaacgacagaggcatcac
tatgagtttgacaagttcatgcggcggaaggatgagaccaaatgggggaagggctactgc
caggaccgagcaaagaaagaaggacaccatcatggctattcctactgtcctgacagtgga
gacaagataggaaaggaggagagagaggacctgggtaacaggaaggaacgcctccgaaac
aaggaccgtccagccatgcagctctatcagccaggcgcacgcaaccgaaagcgcatgagc
tcggcaggcaaaggctacgactgcatccctgtgggccactcgcctgaacccaggacggag
cactgttatgaggttgcgaccatggcaacggggctggagaaaggttttgagaaaagtaaa
gatgagcagtga
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