Oreochromis niloticus (Nile tilapia): 100705332
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Entry
100705332 CDS
T06104
Symbol
lig1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
onl
Oreochromis niloticus (Nile tilapia)
Pathway
onl03030
DNA replication
onl03410
Base excision repair
onl03420
Nucleotide excision repair
onl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
onl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
100705332 (lig1)
03410 Base excision repair
100705332 (lig1)
03420 Nucleotide excision repair
100705332 (lig1)
03430 Mismatch repair
100705332 (lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
onl03032
]
100705332 (lig1)
03400 DNA repair and recombination proteins [BR:
onl03400
]
100705332 (lig1)
Enzymes [BR:
onl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
100705332 (lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
100705332 (lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
100705332 (lig1)
DNA replication proteins [BR:
onl03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
100705332 (lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
100705332 (lig1)
DNA repair and recombination proteins [BR:
onl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
100705332 (lig1)
NER (nucleotide excision repair)
Other NER factors
100705332 (lig1)
MMR (mismatch excision repair)
Other MMR factors
100705332 (lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
100705332
NCBI-ProteinID:
XP_019203031
LinkDB
All DBs
Position
LG18:complement(26999178..27065229)
Genome browser
AA seq
1009 aa
AA seq
DB search
MQRSIASFFQPKSKDIQKKAAEEPVKKPVKSPLKVQNGVQEAESPIKKVVKRCRQILDSD
DDEAPVVKEQVPSKGQGDKEAPDKTEKSRSHPLSPPSAPATPVTPATPATPVTPATSASP
GTPSTPNSVSPTGIVKRKTARKMFPKRKLNESGSGSESPKEEAEVKEEQGQRNKRPRVET
SASGEGNADEPMEEDTKEERGEKAVTEANNPGDEEVENKSKEEETVEKEEQVEKKSSDEK
EEKAEEAEKKNEAKPKTDDDDEKGPAVAKTEVVEKDTRGTEESPKSQTVKRQKEAKEQKD
KEPARKAPISSFFAPRKAAVKTEKPEKNEGEKKTSPERKRSEEESKDTKGEATSGQTDYD
PSRPKYHPVDHACWKQGQKVPYLAVARTFERIEEDSGRLRNIETLSNLFRSVLLLSPDDL
LCCVYLCLNQLGPAYLGMELGVGETVLMKAVAQATGRQLDKIKAEAQEKGDLGLVAESSR
SNQRMMFQPASLTAGGVFRKLKEIASMSGNSAMNKKIDIIKGLFVACRFSEARYIVRSLA
GKLRIGLAEQSVLSALSQAVCLTPPGQGFPPAVIDAGKGMSAESRRAWIEEKSLILKQTY
CEMPNYDVLIPVLLKEGIDQLPNHCKLTPGVPLRPMLAHPTKGVGEVMKKFDEAAFTCEY
KYDGERAQIHILESGEVRIFSRNQEDNTSKYPDIISRIPKVKKDSVVSCVLDTEAVAWDH
EKKQIQPFQVLTTRKRKDVDASEIKVQVCVYAFDLLYLNGESLVRQPLCRRRALLRESFS
EVEGEFVFARSIDSDNTDTIAEFLEQSVRDSCEGLMVKTLEKDATYEIAKRSHNWLKLKK
DYLEGVGDTVDLCVIGAYLGKGKRTGTYGGFLLACYDEENEEFQSVCKIGTGFKDEDLEQ
HYKFLKEHILPKPRAYYRVDQSAEPDVWLDAVQVWEVKCADLSLSPVYKAAMGMVDPEKG
ISLRFPRFLRIRDDKKPEDATAAAQIAELYKKQQQIQNQGDKADPEDYY
NT seq
3030 nt
NT seq
+upstream
nt +downstream
nt
atgcagcggagcatcgcatccttctttcagcccaagagcaaggacattcagaagaaagct
gcagaggagcctgtgaaaaagcctgtcaagagtcctctgaaggtgcagaacggtgttcag
gaagcagagtcgcccatcaaaaaggttgtgaaacgctgccgtcaaatcctggacagcgat
gatgacgaggccccagttgttaaagaacaagttcccagcaagggacaaggagacaaagaa
gctcctgataaaacagaaaagagccgttcccaccccctgtctccaccatcggccccagcc
acgcctgtaaccccggccacccccgccacccctgtcactccagccacctctgcttcaccg
gggacccccagcactcccaattccgtctccccaactgggatcgtcaaacgcaagactgca
aggaagatgttccctaagaggaagctcaatgagagcggcagtggcagcgagagtccgaaa
gaagaggcagaggtcaaggaggagcagggtcagcgaaacaaacggccacgtgtggagacc
agtgccagcggtgaaggtaacgcagatgaacccatggaggaggacacaaaggaagaaagg
ggggaaaaggcagtgaccgaggctaacaacccaggggacgaggaggtggagaacaagagc
aaagaggaagaaactgtagaaaaagaggagcaggtggagaaaaagagctctgatgagaaa
gaggagaaagctgaggaggcggaaaagaaaaatgaagcaaagccgaagacagatgacgat
gatgagaaagggcctgccgtagccaaaacggaggtggttgaaaaggacacgcgaggcaca
gaagagagcccgaaaagtcaaacggtgaaaaggcagaaagaagcaaaagagcagaaagat
aaggagccggccaggaaagcccccatcagcagtttctttgctcccagaaaagcagcagtg
aagacggagaagccggagaagaatgagggggagaaaaagacgagtccagagaggaagagg
tcagaggaggagagtaaagacacgaaaggtgaggcaacctcaggacaaacagactatgat
ccatcgagaccaaaatatcatcccgtggaccacgcttgttggaaacagggccagaaagtg
ccctacttggcagtggctcgcacctttgagaggattgaagaggactctggcaggctgaga
aacatcgagacactgtcaaacctgtttcgctctgtgctgctgctctccccagatgacctg
ctctgctgcgtgtatctgtgtctgaaccaactcggtcctgcctatctagggatggagctc
ggtgttggcgagacggtgctgatgaaagctgttgctcaggccactgggcgacaattggac
aaaatcaaagcagaggcacaggagaaaggagatttgggcctagtggccgagagctcccgt
agcaaccagcgcatgatgtttcagccggccagtctgacagcagggggcgtgttcaggaaa
ttgaaggaaattgccagcatgagtgggaactcggccatgaataagaaaatcgacatcatc
aaaggcctctttgtggcatgccgcttttcagaggcccgctacatagtcaggtctctggct
gggaagctgaggattggtcttgctgagcaaagtgtgctctctgcactgagccaagctgta
tgcctgaccccacctggacaaggttttcctcccgctgtgatcgacgcagggaagggaatg
agtgctgagagcaggcgggcgtggattgaagagaagagtctcattctcaaacagacttac
tgcgagatgcccaattacgacgttctgatccccgttttgctaaaagagggcatagaccag
ctgcccaatcactgcaagctcactccaggtgtaccactgagacccatgttggctcaccca
actaagggtgttggcgaagtgatgaagaagtttgacgaggcagcgttcacctgcgagtac
aaatacgatggcgagcgtgcacagattcacattttggagagtggcgaggttcgaatattc
agccgcaaccaggaagacaacaccagcaaatacccagatatcatctcccgcattcccaag
gtgaagaaggactctgttgtatcctgtgtcctggacactgaggcagtggcctgggatcac
gagaagaaacagatccagcccttccaggtcctcaccactcgtaagagaaaggatgtggat
gcctcggagatcaaagtccaagtgtgtgtgtacgcctttgacctcctctacctcaatggc
gagtccctggtgcgacagccattgtgtcggcgtcgggctctactgagagaaagcttctca
gaggtggagggggagttcgtgtttgcccgatccatcgactccgacaacaccgacaccatc
gccgagttcctggagcaatctgtccgagactcctgcgagggcctcatggtgaagactcta
gagaaggatgccacctatgaaattgccaagcgctctcataattggctcaagttgaagaag
gactacttggagggagttggagacacagtggacctgtgtgtgattggggcctatctgggg
aaaggaaaaaggacaggcacctatgggggcttcctgctggcttgttacgatgaagaaaat
gaagagttccagtccgtctgcaagatcgggacaggcttcaaggatgaagatctggagcag
cattacaagttcttaaaggagcacatcctgcctaagccccgtgcttactaccgcgttgac
caatcagccgagcccgacgtgtggctggatgctgtgcaggtttgggaggtgaagtgcgct
gacctctcactgtctccggtctacaaagctgcaatgggaatggtggatccagagaagggc
atttctctgaggttccctcgcttccttaggattagagacgacaagaagcccgaggatgcc
acggccgcagctcagatcgccgagttgtacaagaagcagcagcagatccagaatcagggg
gataaagctgacccggaggactactactga
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integrated database retrieval system
