Oreochromis niloticus (Nile tilapia): 100705537
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Entry
100705537 CDS
T06104
Symbol
col11a1
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(XI) chain
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
onl
Oreochromis niloticus (Nile tilapia)
Pathway
onl04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
onl00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
100705537 (col11a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
onl00536
]
100705537 (col11a1)
Glycosaminoglycan binding proteins [BR:
onl00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100705537 (col11a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
100705537
NCBI-ProteinID:
XP_005461453
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All DBs
Position
LG9:complement(25762325..25833936)
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AA seq
1808 aa
AA seq
DB search
MEMQRWSTRWKTKRWLMDSTVTGFITITLVLQAANVRAAEPVDVLKVLAFQNYPKGVTKT
TGFCANRRASTPDTAYRVSKEVQISAPTTQLFPGGVFPEDFSILATVRPKSGIQSFLLSI
YNEQGVQQLGVEVGRSPIFLYEDHNGKPVPEEYPLFDGLNLADGKWHRVAISVEKKVVTI
IVDCKNKVTKNLPRSDHASVSTNGITVFGTRILDQEGYQGDIQQLLIVDDPKAAYDYCEH
YSPDCDTALSDSLQAQEPEEYTTDDLDYSPFDEYPEGATETSPTYDDFEPQINNLEGDYN
TDIDYGTVDGTQTQSPFATSGPNEAVEEDVVGAYVTEATHIAPEPTVVAEAQDALDTGAD
AYDFKEYDLNQYDLGEVDSRLYDYGAYDEYGTALPKPEATYDDEVGPGVAAETDVSESTV
AGSVAGFGQKGEKGEPAVIEPGMLIEGPPGTPGPAGLPGPAGLQGPPGTTGDPGDRGPPG
RPGLPGADGLPGPPGTMLMLPFRFGGDGEKGPVVSAQEAQAQAILSQARLAMRGPPGPMG
LTGRSGPVGPPGISGLKGESGDPGPQGPRGTQGPPGQPGKTGKRGRAGADGSRGMPGESG
SKGDRGFDGLPGLPGEKGHRGDPGPMGPPGAPGEDGQRGEDGEIGPRGLAGESGPRGLLG
PRGPPGPPGSPGVAGVDGPQGPKGNMGPQGEPGPPGQQGIPGTQGLPGPQGPIGPPGEKG
PQGRSGLPGLPGADGPPGHPGKEGPAGEKGAQGPSGPQGPIGYPGPRGVKGADGVRGLKG
SKGEKGEDGFPGFKGDMGIKGDRGEIGLIGPRGEDGPEGPKGRAGPPGESGPIGLAGEKG
KLGVPGLPGYPGRQGPKGSSGFPGFPGANGEKGARGTAGKSGPRGQRGPTGPRGARGARG
PTGKPGPKGTAGNDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETG
FQGKTGPPGPGGVVGPQGPTGETGPVGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQG
STGKDGPPGLRGFPGERGLPGAPGPAGLKGGEGPQGPPGPVGSPGERGAAGPGGPIGPSG
RPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPQGPPGEDGDKGEVGEPG
QKGSKGDKGEQGPPGPAGLQGPVGAPGPAGGDGEPGPRGQQGMFGQKGDEGSRGFPGPPG
PIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPSGADGPQGPPGGVGPMGSVGEKG
EQGEAGNPGPPGEPGTKGPKGERGEKGEAGPPGAAGPAGAKGPPGDDGPKGNPGPVGFPG
DPGPPGEPGVAGTDGEPGEKGDDGEAGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQG
EKGAKGESGVEGPAGKTGPVGPQGPPGKPGPEGLRGIPGPVGEQGMPGSPGQDGPPGPMG
PPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGGKGDSGIAGATG
PLGPPGPPGLPGPQGPKGSKGSSGPAGPKGDTGTIGPPGPPGPPGEAIQPLPIQSPKKTK
RSSDIQSDGTIMDYGEGMEDIFGSLNNLKQDIERMKYPMGTQNNPARTCKDLQLCHPEFA
DGEYWIDPNQGCSGDSFKVYCNFTAGGETCIHPDKKSSGVRISSWPKEVPGSWFSEFKRG
KIFSYVDADGNAINMVQMTFLRLLTASARQNFTYSCHQSVAWYDASSDSYNKALRFLGAN
DEEMSYENNPFIKAISDGCETRKGYGKTVMEINTPKIDQVPIIDVMLTDFGDPNQKFGFE
VGPVCFLG
NT seq
5427 nt
NT seq
+upstream
nt +downstream
nt
atggagatgcaaaggtggtccacaaggtggaaaacgaaaaggtggcttatggattccact
gtaaccggattcatcactataaccttggttctacaggctgctaatgtcagagcagcagag
ccagtggatgtcctaaaagtattagcatttcaaaattaccccaaaggagtgacaaaaaca
acaggattttgcgcaaaccgaagagcatcgacgccagatacagcttacagagtttccaag
gaggtccagatcagtgcccccaccacacagctattccctggtggtgtttttcctgaggat
ttctccatcctagccacagtgcgtcccaaatctggcatccagtccttcttgctgtccatt
tacaacgagcaaggagtccagcagctgggtgtggaggttggacgctcacctatcttcctg
tatgaggatcataatggcaagccagtcccagaggagtaccccctgtttgatggtcttaac
cttgctgatggaaagtggcatcgtgtagccatcagtgtggagaagaaagtggtcactatc
attgtagactgtaagaacaaggtcaccaaaaacctccccaggagtgaccatgcctccgtc
agcaccaatggcattactgtgtttggcaccaggatactggatcaggagggttaccagggg
gacatccagcagcttctgattgtggacgatcccaaagcagcatatgactactgtgaacat
tacagcccagactgtgacactgccctcagcgattctttgcaggcacaggagccagaagag
tacactactgatgatttagattactctccgttcgatgagtatcccgagggagcgacagaa
accagtccaacctatgatgattttgagccgcagataaacaatttagaaggagattacaat
acagacattgactacggaacagtagatggtactcaaactcagtccccctttgccacgagt
ggacccaatgaggctgtggaggaggatgttgtcggtgcatatgtcaccgaggccactcac
attgctccagagcccaccgttgttgcagaagcacaggacgccttggatactggtgcggac
gcatatgactttaaggagtatgacctaaaccagtatgacttgggcgaggttgacagcagg
ttgtatgattatggggcgtatgatgagtatggcacagccctgcctaaacctgaggcgacc
tacgatgatgaggtggggcctggggtcgctgctgaaaccgatgtttcggagagtactgtc
gctggttccgtggcaggctttgggcagaagggagagaagggcgagccggctgtgattgaa
cctggcatgctaattgaaggaccaccaggaacccccggcccagcaggtcttccaggaccc
gcaggcctacaaggacccccaggcactactggagatcctggtgacaggggtcctcctgga
cgccctggtctgcctggtgctgatggtttgccgggcccccccggtaccatgctgatgctt
ccattccgtttcggcggggatggtgagaagggtccagtggtgtcggcccaagaagcccaa
gcgcaggccatcctttcacaggctagactggctatgagaggaccccctgggccaatgggt
ttgacgggaagatcggggccagtgggtccacctggcatttctggattgaaaggtgaaagt
ggagaccctggtcctcagggtcctcgtggcacccaaggtccgccagggcagcctggcaag
acaggcaagcggggtcgtgctggagctgatggttcccgtggcatgcctggagaatcaggt
tctaagggtgacagaggatttgatggacttcctgggctgcctggtgaaaaaggacacagg
ggagacccaggaccaatgggacccccaggtgcccctggagaggatggacagagaggcgag
gatggagagattgggcctagaggattagctggagagagtggtccaagaggtttgctggga
cctcgtggtcctccaggaccccctggatcgcctggtgttgctggagttgatggtcctcaa
ggtccaaaaggaaacatgggacctcagggagagccaggcccacccgggcagcagggaatc
cctgggacacagggtcttcctggtcctcaaggccccattggaccacctggagaaaaagga
cctcagggcaggtcagggttgcctggattacctggagctgatgggcctcctggtcatcct
ggtaaggagggaccagctggagagaaaggagcccaaggtccgtcaggcccacagggtccc
attggttatcctgggcctcgtggtgttaagggtgcagatggtgtccgtggtctcaaggga
tcaaagggagagaagggtgaggacggtttcccgggtttcaagggggacatgggaatcaaa
ggagaccggggtgaaattggtttgattgggccccgtggagaggatggtcctgagggtcct
aaaggcagagctggcccccctggtgaatctggtcctattggtcttgctggagaaaagggt
aaactgggtgtcccaggattgccaggttatcctggaagacaaggacctaagggctcaagc
ggtttccccggattccctggagccaatggcgagaaaggagccaggggcactgctggcaag
tctggtccgagaggacaaagaggtccgacgggtcccaggggcgctcgaggagccagaggt
ccaacaggaaaacctggacccaagggcacagcaggcaacgacggtcctcctggcccacct
ggtgagagaggacctcaaggaccacagggaccagtaggtttccctggaccaaagggcccc
cctggaccacctggcaaggatgggctgcccggacaccctggccagcgcggagaaacaggt
ttccaaggaaagaccggtcctccaggaccaggaggtgttgttgggccccagggacccaca
ggagaaactggtcccgttggtgagagaggccaccctggacctcccggcccacctggagag
caggggcttccaggtgctgctggcaaggagggagccaagggagatcctggaccacaggga
tccactggtaaagacggtccccccggtcttcgtggcttccctggagagagaggtttaccc
ggtgccccgggcccagctggtctgaagggaggagagggtccccagggtccacctggtcct
gttggttctcctggtgagaggggtgctgctggcccaggaggtccaattggcccatctggt
agacctggccctcagggtcccccaggtcccgctggagagaagggagcacctggtgagaag
gggcctcaaggtccagctggtcgtgatggtgtccagggtcctgtaggtctgcctggacct
gctggaccccagggcccacctggtgaggatggtgacaagggagaagttggagaaccaggt
cagaaaggaagcaaaggtgacaagggagaacagggtcctcctggtccagctggtctccaa
ggtcctgtaggcgctcctggtcctgctggaggtgatggagagcctggtcccagaggtcaa
cagggcatgtttggacagaagggagatgagggctccagagggttccctggacctcctggt
cctattggtctgcaggggcttccaggacctcctggtgaaaagggtgagaacggcgatgtt
ggacctatgggcccccctggtccacctggtcccagaggtcctcagggtcctagtggagct
gatggtccacaaggtcctccaggtggtgtgggccccatgggatctgtaggtgagaagggt
gagcaaggtgaggctggaaacccaggaccacctggagagcctggaactaagggacctaaa
ggtgagaggggagagaaaggagaagctggcccccctggagctgctggacctgctggcgcc
aaaggaccccctggagatgatggcccaaagggcaaccctggtcctgttggattccctgga
gaccctggccctcctggagagccaggtgtagctggcactgatggagaaccaggagagaag
ggagatgatggagaggctggtcaaccgggacctccaggtccatcaggagaagccggccca
cctggaccacctggcaagagaggacctccgggggctgctggtgcagagggcaggcaagga
gagaagggcgctaagggtgagtcaggtgtggagggtccagcaggtaaaacaggaccagtt
ggcccccagggacctccaggaaaacctggtccagagggtctgcgtggaatccctggccct
gttggtgaacaaggaatgcccggctccccaggacaagatggcccaccaggtcctatgggt
cctcccggtcttcctggcctgaaaggtgacccaggttctaaaggtgaaaagggtcaccca
ggtttgattggtctgattggaccccctggcgagcaaggagagaagggagaccgaggtttg
cccgggcctcaaggttctcctggtggcaagggcgacagtggtatcgctggagccacaggt
cctcttggtcccccaggcccccctggtttgcccggtcctcaaggtcccaaaggatccaag
ggttcaagtggtcctgctggtccaaaaggagacactggtacaattggtcctcctggtcct
cctggcccaccaggtgaagctatccagcccctgccaattcagtcaccaaagaagaccaag
cgctccagtgacatccagtcagatggtaccatcatggattatggcgagggtatggaggac
atttttggctccctcaacaacctcaagcaagacattgaacgcatgaaataccccatgggc
acccaaaacaaccccgccaggacatgtaaagatctccagctctgccacccagagtttgct
gatggtgagtactggattgacccgaatcaaggctgctcaggggattccttcaaagtctac
tgtaacttcactgccggaggcgaaacctgcatccatccagataagaagtccagtggagtc
agaatatcttcatggcccaaagaagtcccaggttcatggtttagtgaatttaagcgtggt
aaaatattttcctatgtcgacgcagatgggaacgcaataaacatggtacaaatgaccttc
ctcagactactgacagcctcagccaggcaaaacttcacctacagctgccaccagtctgtg
gcgtggtacgacgcctctagcgacagctacaacaaggccctgcgtttcttgggcgccaac
gatgaggagatgtcttacgaaaacaaccctttcatcaaggccatctcagatggatgcgag
acgaggaagggctacggaaagactgtgatggagattaatactcccaaaattgatcaggtt
ccaattatcgatgtcatgttgactgactttggggatccgaaccagaagtttgggtttgaa
gttgggcctgtctgcttccttggctaa
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integrated database retrieval system
