Oreochromis niloticus (Nile tilapia): 100705804
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Entry
100705804 CDS
T06104
Symbol
hdac6
Name
(RefSeq) histone deacetylase 6 isoform X2
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
onl
Oreochromis niloticus (Nile tilapia)
Brite
KEGG Orthology (KO) [BR:
onl00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
onl01009
]
100705804 (hdac6)
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
onl03019
]
100705804 (hdac6)
04131 Membrane trafficking [BR:
onl04131
]
100705804 (hdac6)
03036 Chromosome and associated proteins [BR:
onl03036
]
100705804 (hdac6)
Enzymes [BR:
onl01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
100705804 (hdac6)
Protein phosphatases and associated proteins [BR:
onl01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
100705804 (hdac6)
Messenger RNA biogenesis [BR:
onl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
100705804 (hdac6)
Membrane trafficking [BR:
onl04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
100705804 (hdac6)
Chromosome and associated proteins [BR:
onl03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
100705804 (hdac6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
zf-UBP
DUF3515
zf-UBP_var
Motif
Other DBs
NCBI-GeneID:
100705804
NCBI-ProteinID:
XP_005462524
Ensembl:
ENSONIG00000000836
UniProt:
I3IWS1
LinkDB
All DBs
Position
LG20:complement(4893281..4909246)
Genome browser
AA seq
1104 aa
AA seq
DB search
MQSGSDPPGHGPKPVRRSPRLSPQVGSSEGTQESKGGNSLQELKRRGRMERTREEQEEEL
SGKLKTLDLSSRSAASGTGLVYSEIFTHHKNEWDPSHLESPDRVTAVMKELERQDLLPLC
IRVEPREATEEELLLAHMKHYVDLIKSTQTMTLAELQTLSNKYDSIYLHPDSFKVSVTAV
GAVLQLVDRVMTSELKNGFAIIRPPGHHAQANECNGYSIFNNVAIAARYAQTRHAISRVL
IVDWDVHHGQGIQYRFQEDPSVLYFSVHRYEQGSFWPHLPESDSHFVGSGPAEGRNINLP
WNQTGMTDADYIAAFQQVLLPVAYEFQPQLVLVSAGFDAAVGDLKGEMCVSPQCFQVLTH
MLMSLAEGRLVLALEGGYNYESSAESAAACIRALLGGACPPLTPPTAPSDSALQSISQTI
SALYPHWASLQVLEGSPSAEGRAISTSTNQKNTMNPNLAPSVATTTGLVYDERMMEHSNL
WDRHHPEQPQRIFKIFSKHQQLGLVDRCQRIPVRLATEEELSLCHSMQHIEQMKATAVMK
PRELHKLGDEFVSIYLNQQSFQCARLAAGSCLNALDQILCGQVTNAVAIVRPPGHHAERD
YPCGFCLFNTAALAARYAKKASHDPLMRILILDWDVHHGNGTQHMFEDDDSVLYISLHRY
DNGAFFPSSEDAAPDKVGVAKGAGFNVNVAWSGGRMGDSDYLAAFHRVVMPIATEFNPSL
VLVSAGFDAARGDPLGGYNVTPEGYAHLTHMLMSLAGGRVLVILEGGYNLSSISDSMAMC
TSVLLGDPPPALVTPLPPPHHSAVATINEVIRYHVPYWRSLRIHIPESVRAALPSLKHRG
KRSSKGKGRKSEQSSNDKPPMPPARPADSTTVSSLEQLTQGLASLDIGQTSANQNPASSP
VGGARPKVTLSSEKLTCEEVKKESDDSTPVCSESADSVPCQPVGVATPESVTGVDKAGAG
AGAEPEPEGACGWSKPQTSLELMCGADADGSALYVVDPLSWCPHLDAVKPLPSSGIDVFR
PCQDCGSEAENWICLTCYQVFCGRYVNEHMVNHGVVSEHPLVLSFCDLSAWCYLCEAYVH
NQILFEAKNAAHCAKFGEEIPPWS
NT seq
3315 nt
NT seq
+upstream
nt +downstream
nt
atgcagtcggggtcagatcctccaggacatggaccgaagccagttagaagatctcctcgt
ctgtcccctcaggtcggcagcagtgagggaacacaggagagcaaaggaggaaacagcctg
caggagctgaagaggagaggaaggatggagaggaccagagaggagcaagaagaggagctg
agtggcaaattgaagacactggatctgtccagcagatcggcagccagtggaacgggtctc
gtttactctgagatcttcacccaccataagaatgagtgggacccgagtcatctagagagt
ccggacagagtgacagccgtcatgaaggagctggagagacaagatctgctgcctctctgt
atcagagttgagcccagagaagctacagaggaagagctgctgctggctcacatgaaacac
tatgtggacctgataaagtcgactcagacgatgactctggctgaactccaaactctgtcc
aacaaatatgattccatttatctccatccagattccttcaaggtgtctgtgacagctgta
ggtgcagtgcttcagctggtcgatcgggtcatgacctctgaactcaagaacggattcgcc
atcatcagacctccaggtcatcacgctcaggccaacgagtgcaacggttactctatcttc
aacaacgtggcgatcgcagctcgatacgctcagaccaggcacgccatcagcagggtgttg
atagtggactgggatgttcaccacgggcagggcatccagtaccggttccaggaggatccc
agtgttctgtacttcagtgtccacaggtatgagcagggctctttctggcctcacctgcca
gagtctgacagccattttgttggcagcggaccagccgaaggaagaaacatcaacctgccc
tggaaccagacggggatgaccgacgctgattacatcgctgcttttcaacaagtgctgctg
cctgtcgcctacgagtttcagcctcagctggttctggtctctgctggattcgatgccgca
gttggagatctgaagggtgagatgtgtgtgagtcctcagtgtttccaggttctgactcac
atgttgatgagtttggcagaaggtcgacttgttctcgctctcgagggaggttataactat
gagtcgtcagctgagagtgctgcagcctgcattcgagctctgctgggtggagcatgtcct
cctttaactccacccactgctccgtctgacagtgctctgcagtccatctctcagaccatc
tcagctctgtatccacactgggcctctctgcaagtgttggaaggcagcccgtcggctgag
ggacgcgccatcagcacatcgaccaatcagaaaaatacaatgaaccccaacctcgccccc
tctgttgccacgacaacaggtctggtttatgatgagaggatgatggagcattcgaacctg
tgggacagacatcacccggagcagcctcagcgaatctttaagatcttctccaaacatcag
caactgggattggttgatcgctgccagcggataccagttcgcttggcgacagaggaggag
ctgtccttgtgtcacagcatgcagcacatcgagcagatgaaagccacggcggtgatgaag
cccagagaactgcacaaactgggcgacgagttcgtctccatttacctcaaccagcagagc
ttccagtgtgcaaggctggcggctggaagctgcctcaacgccttggaccagatcctgtgt
gggcaggtgactaacgctgtggccatcgtccgtcctcctggtcatcacgctgagagagac
tatccctgtggcttctgtttattcaacacggcagctctcgctgctcgctatgccaagaaa
gcctcccatgatcccttgatgcgaatcctcatcttagactgggatgttcaccacggcaac
gggacgcagcacatgttcgaggacgatgacagtgtcctctacatctccctccaccgctac
gacaatggcgcattctttccatcttcagaggacgctgcccccgacaaggtgggcgtggcc
aagggggcgggttttaatgtcaatgtggcatggagcggaggaaggatgggtgactcggac
tatcttgcagcttttcaccgtgtcgtcatgcctatcgccactgagtttaaccccagtttg
gttctggtgtcggccgggtttgacgcagcccggggggatccgctgggcggctacaatgtg
actccagaaggatacgcccacctcacacacatgctgatgtcactggctggggggcgggtc
ctggtcatactggagggaggttacaatttgtcatccatttctgactccatggcgatgtgc
accagcgtgttgctaggagacccccctcctgccttggtgacgcctctccctcctcctcac
cacagtgccgtggcaacaataaatgaggtcatccgataccacgtcccctactggaggtcc
ctgaggattcacattccagagtctgtccgggcagccctgccctccctgaagcatcgtggg
aaacgtagttctaaaggaaaaggcaggaagtcagagcagagcagcaacgacaaaccgcca
atgccccctgcaagaccggcggactctacgacggtgagcagtctagagcagctcactcag
ggactggccagtttggacatcggtcagacctctgccaatcaaaaccctgcatcctctcca
gtgggaggagctaggccaaaggtcaccctgagctcagagaagctaacctgtgaagaagtg
aagaaggagtcagatgacagtacacctgtgtgcagcgaatcagcagacagtgtgccatgt
cagcctgttggcgtggcaacaccagagtcggtcacaggtgtagataaggctggagccggg
gccggggcggagccagagcccgagggagcgtgtggttggtcaaagcctcagacatccctg
gaactgatgtgtggtgccgacgcagatggatcagctctgtatgtggtggaccctctctcc
tggtgtcctcacctggatgccgttaagcccctcccctcctcgggtatagacgtcttccgg
ccgtgtcaggactgcggctccgaggctgagaactggatctgtctcacttgctaccaggtg
ttctgtggtcgctatgtgaacgaacacatggtgaatcacggagtcgtgtctgaacatccc
ctggttctcagtttctgcgatctctctgcgtggtgctacctgtgtgaggcctacgtacac
aaccagattctgtttgaagctaaaaacgctgctcactgcgccaagtttggagaagagatc
cccccctggagctga
DBGET
integrated database retrieval system
