Oreochromis niloticus (Nile tilapia): 100706060
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Entry
100706060 CDS
T06104
Name
(RefSeq) versican core protein
KO
K06793
versican core protein
Organism
onl
Oreochromis niloticus (Nile tilapia)
Pathway
onl04514
Cell adhesion molecules
onl04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
onl00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
100706060
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
100706060
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
onl00535
]
100706060
00536 Glycosaminoglycan binding proteins [BR:
onl00536
]
100706060
04091 Lectins [BR:
onl04091
]
100706060
Proteoglycans [BR:
onl00535
]
Extracellular matrix (ECM) proteoglycans
Aggrecan / versican family
100706060
Glycosaminoglycan binding proteins [BR:
onl00536
]
Hyaluronan
Extracellular matrix or blood plasma proteins
100706060
Lectins [BR:
onl04091
]
C-Type lectins
Lecticans
100706060
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lectin_C
EGF
hEGF
EGF_TEN
Sushi
EGF_2
EGF_CA
Motif
Other DBs
NCBI-GeneID:
100706060
NCBI-ProteinID:
XP_019221323
LinkDB
All DBs
Position
LG12:complement(16552047..16572922)
Genome browser
AA seq
2280 aa
AA seq
DB search
MIRNLTALPTASSKFTTEKSTATPADVYSSALSDQTEKTSVSPLTDKTMTYSDTTPMDVE
LSSDDTTDILNATSFFSDASPSLSSTVESIPLSLAVTQHVDTDETKVPSLTSVADREVES
ESSQPTVMESFASVSPSTMKSETTSFLSAIDADFSGDSTTVFPEVSSIKTTTVLSSDTSK
TKLDLDSPRESTPTFIDVMDGSPTSPSTVVKSFDSIHTPKIASTSSSSLHSTDHTAAMSS
GTDKYYTTIARVETNSRTEEWSSHDEITHIPSFVNGVPPSFSSLSTMAPTASPVTELEIP
LISHPEKTSLSPFTDNTVLSPEPFTLTDQTVDMFTLSSSPHTTSTETTEMVTTRNTVAFD
FMTRTSTSAPSTTFSDSQRTHTSFTATVESLKTLTHSTMISPHEFTTGESTDAPLFSATT
QSESEAGPLPDPDFSGDYTSTYTDETAPEQSSVESATLAVTTFSPSNTPVFTGEERSSDG
EFTTVTSSPYTLKTFRPMAIPSITPMMTSTYNDMDNSGSFPQDFDLESSQDGSGEKILIE
TTTKPHKEFTVQTDETETDETQSTSDMVSVAFSPQSSTQVTKQFMSPTQSPSMMSPEIYT
SDQGSGVTDQDEWSGDDSSGSSSTRVPEREGSGVSDSTISSAVTSSVFPKDSGPGGHTTD
VLFTVKDTGLSVLTTTKPTITGATHESTSVTSTKSTGHSIFSTEKPTSTARRLNESGTAD
VPKSTAAAASVYSTEKPYTTTEYAITSEKSTPKPDFTLTEVESSGNQTTVKFTLKPSVME
TATFSETAGETKGFATVTPTSDKRVFSQESKITPATDHPLSSTEKDEVAVAEHTTQSPST
ALPSHTTDAPLYNHTVVDFSTESLSSEHKQDEFTSISAPVPTVIYHSVTDQQVEIITPDR
SQAKTRLTEQTPTIVLHASKPSTSTSIIFIEDTEQEDKLFSGVTDSMREDSYSTELITKD
DTITDADTMSVVPSSSFYPTIHTEEAGGVTAITITQKLEVTEEPEGSGTVDDKFLSPTPT
SPSDTSSASTSSEYLFTSELSPVKDISSVETSSEVNVTRSPQAPQLSSGEIYDVTTTHTG
FSFETTKPISDQLEGDTTEISTSSSFSSQILIETADSTSVTLVTSEDYVVTTVKKEKYMT
ASPVILTATSHDITDKTLSSSVFAQTTKPSVTVTPVSTEPGTMKSTSKTSDDDSSGDSDD
SARESSEKPSVSSLESWMTEKTSTPSSLFSTEQARSEIMPTPDTGISSEKNVPATMSPVF
SSEKLSTAMVVTAQTVVTVTTLKGEISSSSDSDIQKTSPHAIITSSHMGTGADPVGVEST
TPKPPSEEEEETIATDTRSPAVPSAVDTSLEISGEATYSFSFETKRTPSTGVSSVSTTET
EGLVFTSEITDQSPKMITEPALTILPSTTEKPAVVSTERDTSTDEDSSSYAKTPVKSEES
FISTEASIIISTAAKGSSEMGLSTFGSDSVTPSLSTVKKNMITSTLSTQPASSQTDESES
FEQTSGQTSNEVFSTAAHATQPPAVTRSIESLNTSTSFESEPKESQNAAITSTDEPTVVT
DNRPADISAISETKVMITTIPTSNVPSTPSQPDVVVQLDSTLSPLQPLTTPMELFEQVKS
EITLTHRPHPDLSHDISLTTTRPVFANHDTSQTAESTVAPAFVSEDGRVSIADGTVEPAV
DQVSSDATTQRSSDLFYDALTDPPPDYEPQNPYVVAADPLYNQTLENDTVLISTPPSVSQ
TPDSKVIAEAIMVTASTPISGTSLSTFQEDSMNTASVVKLGDDEVHSVTSELLSPTSKSP
SVPNDKAESGSVSSGISSSSFDDVSDELMTTKAPKIISIEQALSPDEIKKVFKVNATEAS
KKEGADVTFGKGDISVSSYTEIPTSTQFKTVSPAQVQSQLGAIALTTPSTFSEQDQKLDS
DMTAPPSVNEGKPPIKEEETTTPPNSGFDLGHTVVGETVEISGIDSCTEDVCLNGGSCLT
IGSTYTCHCAPGFSGHQCEIDIDECESNPCRNGGTCVDGLASFTCVCLPSYAGLFCEEDT
ETCDYGWHKFQGHCYKHFPQRKNWDTAERECRINGAHLTSILSHEEQQYVNRLGQDYQWI
GLNDKMYDNDFRWTDGRPMQYENWRPNQPDSFFSTGEDCVVMIWHEDGQWNDVPCNYHLT
FTCKKGTVACSQPPVVENARTFGKTRERYEINSLVRYQCRTGFIQRHVPTIRCHGNGRWD
IPKISCMNPSSSQRTFIRRHQHNSLYSIHNFKNWQDESFHFHHQRYRGRRHKIEHKWKMQ
NT seq
6843 nt
NT seq
+upstream
nt +downstream
nt
atgatcagaaatctcactgcacttcccacagcttcctcaaagttcaccacggagaagtca
acagcaactccagctgacgtttactccagtgctctctcagatcagacagaaaagacttct
gtttctcctttgactgataaaacaatgacctattcggacacaactccaatggatgtagaa
ctttcaagtgatgacaccacagatatattgaatgcaacctcttttttcagtgacgcatct
ccatctttatccagcactgtggaatcaataccgctatcacttgcagtaacacaacatgtt
gatacagatgagactaaagtaccatcccttaccagtgttgcagatcgtgaggttgaaagt
gaaagcagtcaacctaccgtaatggagtcgtttgcttctgtcagtccgtcaacaatgaag
tcagaaactacatccttcctgagtgccatagatgcagatttttctggagacagcactact
gttttccctgaagtctcaagcatcaaaacaacaacagtgctttcaagtgatacttcaaaa
actaaactagatcttgacagtcctcgagaaagcactcctacttttatcgatgtcatggat
ggttcacccacctcaccaagtactgttgttaagagttttgatagtattcacactccaaaa
atagcttcaacctcgtcttcatcccttcacagcactgaccatacagctgcaatgtcatct
ggaacagataaatactataccactattgcaagagttgaaactaactcccgtactgaggag
tggagctcacatgatgagataactcatattccatcctttgtcaatggagttcctccatct
ttttcatcgctcagcacaatggcaccaacagcaagtccagtcacagaacttgagattcca
ttaattagtcacccagagaaaacctcgctttccccctttactgacaacacagtcttatct
cctgaaccctttacattaactgaccaaactgtagatatgtttaccttatcttcttcccca
catacaacttcaactgaaacaacagagatggtaacaacaagaaacactgttgcttttgac
ttcatgactaggacatcaacatcagcaccatcaactactttcagtgactctcaaagaaca
cacacatcctttacagcaacagttgaaagcctgaaaactttgactcacagtacaatgatt
tcacctcatgagttcacgacaggggagtctacagatgctcctctgttttctgccactact
cagtctgagtcagaagcaggtcctttacccgacccagacttctcaggagattacacatca
acatacacagatgaaacagcacctgaacaatcctctgtggaatcagcaaccctagcagta
acaacatttagtccatcaaacacacctgtattcaccggggaagagcgttcaagtgatgga
gaatttacaactgttacatctagtccctatacactcaaaacttttcggccaatggcaata
cccagtatcaccccaatgatgacctctacctacaatgacatggacaactctggcagcttc
cctcaagactttgatttggaatcaagtcaagatggatctggtgaaaagatattaattgaa
actactacaaaaccacacaaggaatttacggtgcaaacagatgagacagaaacagatgag
actcagagcacatctgacatggtaagtgttgcattttcacctcagtctagtacacaggtt
accaaacaatttatgtcaccaactcaatctccaagcatgatgagccctgagatttacact
tctgatcagggcagtggggtcaccgatcaagatgagtggtcaggtgatgactcaagtggg
tcatcctccacaagagtacctgaaagggagggttctggagtttcggatagtaccatttcc
tcagcggttacaagttcagtgtttcccaaagatagtggcccaggtggccataccactgat
gtgctttttacagtaaaagacacaggattatcagttctaaccacaaccaaaccaacaata
acaggagcaacccatgaaagtacatctgttactagcacaaagagtacaggccattccatt
ttcagcacagagaaaccaacaagcacagcaagaagacttaatgaaagtggaacagctgat
gttccaaaatctactgcagctgcagcttctgtctacagcacagagaagccatacacaaca
acagaatacgcaatcacaagtgaaaaatcaacaccaaaaccagattttactttgacagag
gtggagagttctggcaaccaaaccactgtgaagttcaccctaaagccttcagtgatggag
actgccacattttcagaaacagcaggtgaaaccaaaggttttgcgacagtaacaccaact
tctgataagagggttttctcacaggagagtaaaattactccagcaacagatcatcccctt
tcaagcactgagaaagatgaggttgctgtggctgagcacacaacacaatccccctctaca
gccctgccctcccatacaactgatgccccactatataatcacaccgttgttgacttcagc
acagaaagcttgagcagtgagcataaacaagatgaatttacatcaatatctgccccagtt
cccactgttatatatcacagtgttacagatcaacaagttgagattattactcccgacagg
agccaagccaagactcgactaactgaacagacacccaccatagtcctgcatgcatccaaa
ccatcaaccagcacatctatcatattcatcgaggatacagaacaggaagataaactgttc
tctggagttacagatagtatgagagaagacagctacagtacagagcttattaccaaagat
gatacaatcactgatgcagatacgatgtctgtggttccctcatcttcattttatccaact
attcatacagaggaagctgggggtgtcacagcaattacaataactcaaaagctggaagtt
acagaagaaccagagggttcagggactgttgatgacaaatttttgagtcctacaccaact
tcacccagtgatacatcatcagcctcaacatcttctgaatacttgttcacttcagaattg
tcacctgtgaaagacatttcttcggtagagacatcaagtgaagtaaatgtcacaaggtcg
ccacaggcgccacagttaagctctggagaaatctatgatgttacaactacacacacaggt
ttctcatttgagactaccaaaccaatttctgatcaattggaaggagacactactgagatt
tccacttcctcatctttttcttctcaaatcttaatagaaacagcagactctacctctgtc
actttagtgactagtgaagattatgtggtcaccacagttaaaaaagaaaaatacatgaca
gcatcacccgtaattctaacagctacaagtcacgacataactgataaaaccttaagttcg
tctgttttcgcacaaaccactaaaccttcagtcactgtcacaccagtctccactgaacct
ggaacaatgaaatccaccagtaaaacatctgatgacgactcttcaggtgactctgatgac
tctgcacgagaaagctcagagaaaccttcagtatcatctttggaaagttggatgactgaa
aaaacatctacaccctcttcactgtttagtactgagcaagccaggtctgagatcatgcct
actcccgacactggcatctcttctgagaaaaatgtgccagccacaatgagcccagtgttt
tctagtgagaagttaagcactgctatggttgtaactgcccagactgtagtaacagtcaca
acactgaaaggggaaatttcaagtagttcagacagtgacatccagaaaacatctcctcat
gctattataacttcatctcatatggggacaggagcggaccctgttggagtagaatctaca
actccaaaacctccaagcgaagaagaagaagaaactatagctactgacacaagatctcct
gctgtgccaagtgctgtagacacatcactagagatctcaggtgaagcaacttattcattt
tcatttgaaacaaaaaggactccatccacaggtgtgtcctcagtttctaccactgagact
gaagggttggttttcacttcagaaattactgaccagtcacccaaaatgataacagaacct
gcccttaccattcttccgtctaccactgagaagccagctgtagtgtcgactgagagagac
acctcaactgatgaagacagttcaagttatgccaagacgccagtgaagagtgaagagagt
tttatatcaacagaagcaagtattattatttctacagcagctaaaggttcaagtgaaatg
ggattgagcacctttgggtctgactctgtcactcctagtttgtcgactgttaagaagaat
atgattactagcactttatccactcagccagcaagctcccaaacagatgagtcagaatca
tttgaacaaacctcaggtcagacatcaaatgaggtcttcagcactgcagcccatgcaaca
cagccccctgctgtgaccagatctattgagtcattgaatacgtcaacttcttttgagtca
gaaccaaaggagtcacaaaatgcagctataacaagcacagatgaacccactgttgtcaca
gacaacagacctgcagacatctcagctatctcagagacaaaagtaatgatcaccacaata
cccacttcaaatgtcccctcaacaccatcacagccagatgttgtcgttcagttagactca
actctttctcctctacaaccactgacaactcccatggaattatttgaacaagttaagtca
gaaattacacttacacaccgcccccatcctgatctttctcatgatatatcactgaccaca
actcgccctgtatttgctaatcatgacacaagccagactgcagaatcaacagttgcgcct
gcttttgtttctgaagacggccgtgtttcgatagcagatgggacagttgaaccagctgtt
gatcaggtctcaagtgatgcaacgactcaacgatcttcagacctattttatgatgcgtta
actgatccacccccagattatgaaccacaaaatccttatgtggtcgcagcagatcccctg
tacaaccaaacactagaaaacgatacagtgttaatttcaacaccaccttctgtttctcaa
acacctgactcaaaggtaatagcagaagctatcatggttacggcatcaactccaatcagt
ggtacatcactctctactttccaagaagacagcatgaatacagcaagtgttgttaagctg
ggtgatgatgaggttcacagtgtcacctctgagctcttatcgccaacatctaagtcacct
tctgtccctaatgataaggctgaaagtggatctgtaagttctgggatttcatcctccagc
tttgatgatgtatctgatgaactgatgactacaaaggcaccaaagatcatcagtatagaa
caggctctatccccagatgaaatcaagaaagtatttaaggtaaatgctacggaagcttca
aagaaagaaggtgctgatgtcacgtttgggaaaggtgacataagtgtctcttcttacact
gaaataccaaccagcactcaattcaagacggtatcaccagcccaggtgcaaagtcagctg
ggtgcaattgcattaaccacaccatcaaccttttctgagcaagaccagaaactggacagt
gatatgactgcaccaccatcagttaatgaaggaaaaccaccaataaaagaagaggaaaca
accacaccgcctaattctggatttgatctgggacacactgttgttggcgagactgtggag
atttctggaattgactcatgcacagaggatgtttgtctaaatggaggctcttgcttgacg
attggcagcacctatacctgtcactgtgctcctggtttcagtggtcatcaatgtgaaata
gatattgatgagtgtgaatcaaacccctgccgcaatggaggcacgtgtgtcgatggcttg
gcttctttcacatgtgtgtgtctcccaagctatgctgggctgttttgtgaagaggataca
gaaacatgtgactacggctggcataagtttcaaggccactgctacaagcacttccctcag
aggaaaaactgggacacagcagagagagagtgccgcatcaacggggctcatctcacaagc
atcctgtcccacgaggagcaacaatatgtcaaccgtcttggacaggactaccagtggatc
ggcctgaatgataagatgtatgacaacgacttccgctggaccgatggtcgccctatgcaa
tatgaaaactggaggcccaaccagcctgacagcttcttctctactggcgaggactgtgtg
gtgatgatatggcatgaggatggtcagtggaatgatgttccttgcaactaccacctcact
ttcacctgcaagaagggcacagtggcctgtagtcagcctcctgtggtagagaatgcacgt
acctttgggaagacgcgtgaacggtatgagatcaactcgctggtgaggtaccagtgccgt
acaggctttattcagagacatgtcccaactattcgttgtcatgggaatggacgatgggat
atccctaaaatcagctgcatgaacccctcaagctctcagaggacctttatcagaaggcat
cagcacaatagtctctacagcattcacaacttcaagaactggcaagatgagtccttccac
tttcatcatcagcgctaccgaggaaggagacacaaaatagaacataagtggaagatgcag
tga
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integrated database retrieval system