Oreochromis niloticus (Nile tilapia): 100706148
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Entry
100706148 CDS
T06104
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1 isoform X2
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
onl
Oreochromis niloticus (Nile tilapia)
Pathway
onl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
onl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100706148
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
onl03019
]
100706148
Messenger RNA biogenesis [BR:
onl03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
100706148
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fip1
Motif
Other DBs
NCBI-GeneID:
100706148
NCBI-ProteinID:
XP_005456850
Ensembl:
ENSONIG00000008785
LinkDB
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Position
LG6:23844094..23856235
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AA seq
555 aa
AA seq
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MSAEEADKTATTDASAGDEEEEWLYGDESESKDEDEEAKLNAAVSAPADASTDDAAAHAT
GNGVASEATGEAAGEDVESDSDSDDDDDDVRVTIGDIKTGAPQYTTYGAPPVNLNIKSTG
SRPYGQVSAKLKGVDLDAPGNINGVPVLEVDMESFEEKPWRKPGADLSDYFNYGFNEDTW
KAYCEKQKRLRMGLEVSTVGSVTSKITVQQGRTGNEKDIPSLPVHTSKPDFTSPVNLYKS
AVSQVTRISPPLWTGPPAQDMSYYTKSSGTIDVIGGQLATISRVEGRRRHNLEGNNIQVI
SEHSTSEAEPAPAKIPTFFPPGPLPPNIPPPPFLPPPPNVSTAPPLIPPPRLPITVPPPS
FPPPTSGPPPSIIPTMDSHPGGYDGRSVPPYPFPQGAYPPPMVGGVPPPWPPMIDNSKPW
DYYSRRDDKRDKDRERPRERTHEREREREHSPSAMSYTSDDERFRYREYQERGYAERHRD
RASREKEERHRERRHREKEEGRHKSSRSSSSRRRHDSEEGDSHRRHKHKKSKRSKEGKEA
SEEISGDQENQEAME
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcggaggaagcggacaaaacagccaccactgatgccagcgccggagacgaggag
gaggaatggctgtatggagatgagtcagagagcaaagacgaggatgaagaagccaagctg
aacgctgctgtcagtgcccctgctgatgcttcaacagatgatgctgctgcgcacgctaca
ggaaatggagttgcctctgaggccacaggtgaggctgcaggcgaggatgtggagagcgac
agcgacagtgacgatgacgacgatgatgtccgtgtcacgattggagacataaaaaccgga
gcgccacagtacacaacttatggagccccacctgtcaacctcaacatcaaatcaacaggc
tcccgaccttatggacaagtttccgcaaagctgaagggagtggatctcgatgcacctgga
aacatcaatggtgttccagtgctagaggtggacatggagtcttttgaagagaaaccatgg
aggaaaccaggagccgatctgtcagactacttcaactacggcttcaatgaagacacatgg
aaggcttactgtgaaaaacagaagaggctgcgtatgggcctcgaggtctctacagttggc
tcagtgacaagcaagatcactgttcagcagggcagaactggtaatgaaaaagacataccc
agtttgccagttcacacctcaaagccagacttcacatctcctgtcaacttgtacaagtct
gctgtcagtcaggtcaccaggatctctccccctctttggactggcccgcctgctcaggac
atgtcttattatacgaaatcgagcggcacaatcgatgtgattggtggacagttggcaact
atcagcagagttgagggtcgacgccgacataatctagagggcaacaatattcaggtaatc
tctgagcactcgacatcagaggctgagcctgctccggctaagattcccacattcttccct
cccggaccacttcctccaaacattcccccaccgccatttctccctccgccaccaaacgtc
agtactgcacccccactcatccccccacccaggttgcccattactgtccctcctcctagt
tttcctccaccaactagtgggcctcctccttctatcatccccactatggacagccatcca
ggaggttatgatggacgctctgttcctccgtatccgtttcctcaaggtgcttaccctccc
cccatggttggaggtgtgcctcctccttggcctccaatgatagataactccaaaccttgg
gattattattcccgccgagatgacaaaagagacaaggacagagaaagacccagagagagg
acacatgagcgggagcgagagagggagcacagcccttcagctatgagctataccagcgac
gacgagcggtttcggtaccgtgaatatcaagagcgtggttacgcagaacgccaccgtgac
cgtgcaagccgagagaaagaggaaagacacagagagaggcggcacagagagaaagaagag
gggcgccacaagtcctcacgcagcagcagtagcaggaggaggcacgacagcgaggagggg
gacagccaccggcggcacaaacacaagaagagcaagaggagcaaggagggcaaagaggcc
agcgaggagatcagcggagaccaagagaatcaggaagccatggagtag
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