Oreochromis niloticus (Nile tilapia): 100706682
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Entry
100706682 CDS
T06104
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
onl
Oreochromis niloticus (Nile tilapia)
Pathway
onl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
onl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100706682
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
onl03041
]
100706682
03009 Ribosome biogenesis [BR:
onl03009
]
100706682
Enzymes [BR:
onl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
100706682
Spliceosome [BR:
onl03041
]
Complex A
U2 snRNP components
U2 related factors
100706682
Complex B
100706682
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
100706682
Ribosome biogenesis [BR:
onl03009
]
Eukaryotic type
90S particles
Helicases
100706682
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
WHD_HA2
DEAD
AAA_22
AAA_19
AAA_25
Cas3-like_C_2
Flavi_DEAD
SRP54
AAA_29
nSTAND3
Atrophin-1
nSTAND_NTPase5
AAA_7
Motif
Other DBs
NCBI-GeneID:
100706682
NCBI-ProteinID:
XP_003454236
Ensembl:
ENSONIG00000014504
UniProt:
I3KAV1
LinkDB
All DBs
Position
LG6:complement(19335142..19345204)
Genome browser
AA seq
762 aa
AA seq
DB search
MSKRHRLDLGDDYSSSKKRSDGRDRDRDRDREDRSRDRDRDRDRDRDRDRDREPKPSSAP
SNSTPAAPGLPPLKQMVLNQQINPFTSLPHTPRYYEILKKRLQLPVWEYKESFTDIITRH
QSFVLVGETGSGKTTQIPQWCVDMVRGLPGPKRAVACTQPRRVAAMSVAQRVADEMDVML
GQEVGYSIRFEDCSSAKTILKYMTDGMLLREAMNDPLLERYGVIILDEAHERTLATDILM
GVLKEVVRQRSDLKVIVMSATLDAGKFQVYFDSCPLLTIPGRTHPVEIFYTPEPERDYLE
AAIRTVIQIHMCEEDEGDCLLFLTGQEEIDEACKRIKREVDDLGPEVGDIKIIPLYSTLP
PQQQQRIFEPPPPRKPNGAIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRV
ESLLVTAISKASAQQRAGRAGRTRPGKCFRLYTEKAYKTEMQDNTYPEILRSNLGSVVLQ
LKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALNDDGDLTELGSMMAEFPLDPQLAK
MVIASCEFNCSNEILSITAMLSVPQCFVRPTEAKKAADESKMRFAHIDGDHLTLLNVYHA
FKQNHESNQWCYDNFVNYRSLMSADNVRQQLSRIMDRFNLPRRSTEFTSRDYYINIRRAL
CTGFFMQVAHLERTGHYLTVKDNQVVQLHPSTVLDHKPEWVLYNEFVLTTKNYIRTCTDI
KPEWLVKIAPQYYEMSNFPQCEAKRQLERIIAKLESKEYSQY
NT seq
2289 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaaagacatcgtttggatttgggtgatgactactcctccagtaagaagaggtct
gacggacgagaccgggaccgtgacagagaccgcgaagaccgttcgagggacagggaccga
gacagagaccgtgatcgggacagagaccgggacagagaaccaaagccatctagtgcccca
tctaacagcacacccgctgctccaggcttaccaccgctcaagcaaatggtcctaaaccag
cagatcaacccattcaccagcctgccccatactccccgctactatgagatcctgaagaag
aggctacagcttccagtgtgggagtacaaggaaagcttcactgacatcatcacacgtcat
caaagctttgtgcttgttggagagactggctccggcaagacaacacagatcccacagtgg
tgtgtggatatggttagaggcttgcctggtcctaagcgggctgtagcctgtactcagccc
aggagagtagcagccatgagtgtggctcagagggtggcggacgaaatggacgtcatgctt
ggacaggaagttggctactccatccgatttgaggattgtagctccgccaagactatatta
aagtacatgacagacggtatgttgttaagagaggccatgaatgacccactactggagcga
tatggtgtgatcattctggatgaggctcacgagagaactctggccacagacatcctgatg
ggagtactgaaagaagtggttcgtcagagatcagatctgaaggtgattgtcatgagtgcc
acactagatgctgggaagttccaggtgtactttgacagctgtcctcttctgactattcct
ggacgtacacatcctgttgagatcttttacactccggagccagagcgggactaccttgag
gcggcaatccgcactgtcatccagattcatatgtgtgaggaagatgaaggtgactgtctt
ctcttcctcactggtcaagaggaaattgatgaggcatgcaaacggatcaagcgtgaggta
gatgacctgggtcctgaggttggagacatcaaaatcattccactgtattccacgttgcct
ccacagcagcaacaaagaatctttgagccgcctcctccaaggaagccaaatggtgcaata
ggaagaaaggttgtggtgtcgacaaacatcgctgagacttctctaacaattgatggcgtg
gtgtttgtcattgaccctggatttgccaaacaaaaggtgtacaatcctcgaatcagagtg
gagtctctgctcgtcacagccatcagtaaagcttctgcccagcagagggcaggacgagct
ggaagaacacgtccagggaaatgcttccgtctctacacagagaaggcctacaaaacagag
atgcaggataacacataccctgagattcttcgctcaaacttgggatctgtagtgcttcag
cttaaaaagctgggtattgatgacctcgtccactttgacttcatggatccacctgctcct
gagacgttgatgagggcccttgagctgctgaactacctggcagctctcaatgatgatggt
gacctgacagagctgggctccatgatggcagaatttcctctggacccccaactggcaaag
atggtcattgcaagctgcgagtttaactgctccaacgagatcctttccattactgccatg
ttgtcagtcccacagtgttttgtccgtcctacggaggctaagaaggcagcagacgagtcc
aagatgaggtttgctcacattgacggagaccacttgacgctgctcaacgtctatcacgcc
ttcaaacaaaaccatgagtctaaccagtggtgctatgacaactttgtcaactaccgctcg
ctgatgtctgccgacaatgtgcggcagcagctgtccaggatcatggaccgcttcaacctg
cctcgtcggagcacagagttcacaagcagagattactacatcaacatccgacgggcgctc
tgcaccggcttcttcatgcaggtggctcatttggagcgcacaggccattacctcacagtg
aaagacaaccaagtggtccagctgcacccatctacagtcctggaccacaaaccagagtgg
gtgctctacaacgagtttgtcctcaccaccaagaactacatccgcacatgcacagacatc
aagccagagtggctggtgaagattgcacctcaatactacgaaatgagtaacttcccacaa
tgtgaagctaagcgacagctggagcgaatcattgccaaactagagagcaaagagtattcc
cagtactga
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