Oreochromis niloticus (Nile tilapia): 100706853
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Entry
100706853 CDS
T06104
Symbol
lig3
Name
(RefSeq) DNA ligase 3
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
onl
Oreochromis niloticus (Nile tilapia)
Pathway
onl03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
onl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
100706853 (lig3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
onl03400
]
100706853 (lig3)
Enzymes [BR:
onl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
100706853 (lig3)
DNA repair and recombination proteins [BR:
onl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
100706853 (lig3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
100706853
NCBI-ProteinID:
XP_003453487
Ensembl:
ENSONIG00000013282
UniProt:
I3K6G0
LinkDB
All DBs
Position
LG10:27121316..27141190
Genome browser
AA seq
1012 aa
AA seq
DB search
MQKTLILLLQKTIRVVLNPPGKLVRCQKYFRLCRAFSVYSCAERLPLSFHELHFTRKISA
FSSVSQKHSLLPNYPPWFFLHRSFSNQPDMADQRFLVEYAKRGTAGCKKCKDKIQKGIVR
IGKIVPNPFSESAGEMKEWYHVKCIFEKLERARATTKKIEDITDLEGWEELQDDDKEIIN
KHVSDLMAKVNASPKKKVQAKLNTTGQLMAPPADPSVNAPRKFSGFTATKAGSSSSSPGP
SSSPAKASQGSALSTQLCDPKHKDCLFREFRKLCAMVAENNSYNTKTQIIEKFLRKGTSG
DKFHGDLYLTVKLLLPGVVKSVYNLNDKQIVKLFSRIFRSNQDDMVRDLEQGDVSETVRM
FFEESKSFPPAAKSLLTIQEVDASLTRLSQLTKEDEQQNELEDIAKKCTSNDLKCIVRLI
KHDLKMNAGAKHVLDAVDPNAYDAFKASRNLGDVIERVLRNQQEASNGSGPKKLLTIEAS
LMTPVQPMLAEACKSIEYAMKKCPNGMYSEIKYDGERVQVHKNGDNFNYFSRSLKPVLPH
KVAHFKEYIPQAFPGGHSMILDAEVLLIDTKTSKPLPFGTLGVHKKAAFQDANVCLFVFD
CIYFNGVSLMERPLCERRKFLHDNMVEVPNRILFSEMKHVTRAGDLADMITRVIREGLEG
LVLKDVKSTYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGKGSNGGIMSSFLMGCY
DPDSKKWCTVTKCSGGYDDAMLARLQKELDMIKISKDPSKIPSWLKIIKNYYPDFIIRDP
ENAPVWEITGAEFSKSEMHTADGISIRFPRMTRIRDDKDWKSATNLHQLKELYRISKENS
DFKVTAGPSTSNDDKGSSGGDSGGSSPSSSSNKGAPPKKTSSSTPPKAKAVKSQPRTPSS
DAPSAKKVKKSESVHSNGQTKAKATSQKLEPRNDKTLLDIFSGVKLFLPNSVQDFDKLRR
YFVAYDGDLVPDYDAASATHTLAEPEEQSQAQKVTSSWIWECIRKRRVVAPC
NT seq
3039 nt
NT seq
+upstream
nt +downstream
nt
atgcagaaaactctcattttattgcttcagaagactatccgcgtagtcctaaatccccct
ggaaaacttgttagatgtcagaaatacttcaggttgtgtagggccttttctgtctattca
tgtgctgagcgtctacctttgtcttttcatgagttacattttacaaggaaaatctctgcg
ttttcctcagtatcccaaaagcacagtcttctcccaaactatcctccctggtttttcctg
catcgaagtttctccaatcagccggatatggcagatcagaggtttctcgttgaatacgcc
aaacgtggcacagcaggatgtaagaaatgcaaggacaaaatccagaagggaatagtgcgc
ataggcaaaattgtgccaaaccctttcagtgagtctgcaggggagatgaaagagtggtac
catgtgaagtgtatattcgaaaagctggaaagagccagagccaccacgaagaagatcgag
gacatcaccgacctggagggctgggaggaattacaggacgacgacaaggagattataaat
aaacacgtttcagacctgatggccaaagttaatgcaagtccaaaaaagaaggtgcaggcc
aagttgaacaccaccggtcagctgatggctcctcctgctgacccatctgtcaatgcgcca
aggaagttttcaggcttcactgcaacaaaggctggcagttccagcagcagccctgggcca
tcctcttcccctgccaaagccagccaaggcagcgcgctgtccacccagctctgtgacccc
aagcacaaagactgcctcttcagagagtttcgcaagctctgtgccatggtggccgaaaac
aacagctacaatacaaagacgcagattattgaaaagttcctcaggaagggcacaagtgga
gataagttccacggcgatctttacctgactgtgaaattgctcctgccgggtgttgtgaaa
agcgtctacaacctcaatgacaagcagattgtaaaactcttcagccgcatattcaggagc
aaccaggatgacatggtgcgcgatctggagcagggtgacgtgtctgagacggtgaggatg
ttctttgaggagagtaaatcatttcccccggctgccaaaagtctccttaccatccaggaa
gtagacgcatccctgactcgactttcccagctgacgaaggaggatgagcagcagaacgag
ctggaggatattgccaaaaaatgcaccagtaatgacctgaaatgcatcgttcgcctaatt
aagcacgatttgaagatgaacgctggtgcaaaacacgtcttggatgcagtggatccaaac
gcttacgatgccttcaaggcctcgcgtaatctgggggacgtgattgaaagggtgttaagg
aatcagcaggaggcgtccaatggttcaggaccaaagaaactcctcactatcgaggcctca
cttatgacccccgtccagcccatgttggcggaggcgtgtaaatccatcgagtacgccatg
aagaaatgccccaacgggatgtactcggagatcaagtacgatggcgagcgcgtgcaggtc
cacaagaacggagacaacttcaactacttcagtcgcagcctcaaaccagtgctgcctcac
aaagtggcccatttcaaagaatacatccctcaggcttttcctggtggccacagcatgata
ctggatgctgaagtcctcctaattgacacaaagaccagtaaacccctgcccttcgggacc
ttgggtgtacacaagaaagcagcctttcaagacgccaacgtgtgcctttttgttttcgac
tgtatctacttcaatggtgtgagtctcatggagaggcctctgtgtgaacgcaggaagttc
ctgcatgacaacatggttgaagtccccaacaggatcctgttctcagagatgaagcacgtc
actagagcaggggatctggctgatatgataactcgtgtcatcagggagggacttgaaggt
ctggtgctaaaagacgtaaagagcacctatgagccagggaagcgccactggctgaaagta
aagaaggactatttgaatgaaggggcgatggcggacacagctgacctggtggtgctggga
gccttctacgggaaaggctcaaacgggggcatcatgtccagttttctaatgggctgttac
gacccagactccaagaaatggtgcacagtcaccaagtgctccggaggctacgatgacgcc
atgttggccaggctccagaaagagctggatatgatcaaaatcagcaaggacccaagcaaa
atccctagctggttgaaaatcatcaagaactattatccagatttcattatccgcgatcct
gagaacgcacctgtgtgggagatcacaggcgcggagttttccaaatcggaaatgcacacc
gctgatggcatctccatccgcttcccccgcatgacgcgaatccgcgatgacaaggactgg
aagagcgccaccaacttgcaccagcttaaagagctgtaccgcatatcgaaggagaacagc
gacttcaaagtgacagcgggtccgtctacgtccaacgatgacaagggctcatcggggggg
gacagcggaggaagctcgccatcatcctcctccaacaaaggtgctccgcccaagaagacg
agcagcagcactccacccaaagccaaggcggtgaaatcccagcctcgcactcccagctca
gacgcacccagtgctaagaaggtgaagaagagtgagagtgttcacagcaacggacaaact
aaagcaaaagctacctcacaaaaactggagccaaggaatgacaagacgctgctggacatc
ttcagcggcgtgaagctcttcctgcccaactcggtgcaggactttgacaagctgaggcga
tacttcgtggcgtacgacggggacctcgtgccagattacgacgccgcctccgccacgcac
actctggccgaacccgaagaacagagccaggctcagaaagtgacctccagctggatctgg
gaatgtatccgcaagaggcgtgtcgtagctccctgttaa
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