Oreochromis niloticus (Nile tilapia): 100706888
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Entry
100706888 CDS
T06104
Name
(RefSeq) LOW QUALITY PROTEIN: endoribonuclease Dicer
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
onl
Oreochromis niloticus (Nile tilapia)
Brite
KEGG Orthology (KO) [BR:
onl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
onl03036
]
100706888
Chromosome and associated proteins [BR:
onl03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
100706888
microRNA pathway
RISC loading complex
100706888
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Dicer_platform
Dicer_dsRBD
Dicer_PBD
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
PAZ
Helicase_C
DEAD
ResIII
Cas3-like_C_2
dsrm
Motif
Other DBs
NCBI-GeneID:
100706888
NCBI-ProteinID:
XP_019204140
Ensembl:
ENSONIG00000010424
LinkDB
All DBs
Position
LG19:complement(766172..798379)
Genome browser
AA seq
1906 aa
AA seq
DB search
MAGLQLVTPATSPMGPFFGLPWQQEAIHDNIYTPRKYQVELLEAALERNTIVCLNTGSGK
TFIAVLLTKELXHQIRGPYQENAKRTVFLVNTASSVVQQAAAVRTHSDLSVGEYTDLEET
LAWTDQRWSREIIESKVLVMTCHIFLHVLKNKILPLSKINLVVFDDCHLAITDHPYCQIM
KLFEGCSCTPRILGLTASILNGKCDPSELEQKIQNLERILKSNAETATDLVVLDRYASQP
REVVLDCGSYVDKSGLSSRLQAELNEALHFLNDCNISVVKEDRDPTFISKQVLNDCRAVL
QVLGPWCADKAAGIMVRELQKYIKHEQEELSRKFLLFTDTILRKVHALCEEHFSPACLDL
KFVTPKVLRLLEILHEYKPFERQQFESVEWYNNRNQDNYVSWSDSEDEDEDEEVEAKERP
EANFPSPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHSIGKNQAR
NKQMEVEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSK
GRARAPVSNYIMLADTGRTKAFEEDLSTYKAIEKILRNKCSKSVEVSEFEVEQVMDDDNI
LPPYVLRSEDGGPRVTINTAIGHINRYCARLPSDPFTHLAPKCKTVEMGDGYFQSTLYLP
INSPLRVPVKGPVMNCARLAEKAVALVCCEKLHKIGELDDHLMPVGKETVKYEEELDLHD
EEETSVPGRPGSTKRRQCYPKAIPECLCDCYAVPEQSYYLYVIGMVLTTPLPDELNFRRR
KLYPPEDTTRCFGILTAKPIPRIPHFPVYTRSGEVTISIELQKSGFTLTTAQLDLITRLH
QYIFSHILRLEKPALEFMPTMADSAYCVLPLNVVGDSNTLDMDFKFMEDIEKSEARTGIP
TTQYTKQNPFTFKLEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPSPEYETFAE
YYKTKYNLDLSNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNK
QILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQTASEAGVGVQTLPPDFR
YPNLDFGWKRSIDSKTFISCPESCSEEGASHCKHQETISPDPSSLMLPSGEHSSMPEQED
FKALDSEEVPCTRNLTNGTAFVASCDDGNQNEHLPQCDNCQCSQLSFAKLQSSKSVQSTT
SVLVQPPHTLKKPNSSPPQPSDECTSGRTSDHTKKATSVCSQAATSPNTPTAPSDVCADP
QHGSHAANSPKNLGPNPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPD
AHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVNWLPPGYVVNQDKSSTDRL
NSEEAKEELLANGRSGHEYDEDDDEGEDVDEDGELMLKDEPKDEVNMEDDLEYYKEHIRF
IDNMLLGSGAFGKKISLSGFPPNLTPASGSSPAMESPYDWKTPKKPPHPTAAHYPTEQVP
SGPSPEEFDYSSWDAMCYLDPSKAGEEDDFVVGFWNPSEENCGTELGKQSISYDLHTEQC
IADKSIADCVEALLGCYLTSCGERAAQMFLCSLGLKVLPLERGTLTGAVAQVHTHTQVAD
LCYGWLKIPPRCMLDHPDAERTLNHLISGFENFEKKINYTFKNKAYLLQAFTHASYHYNT
ITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHK
YFKAISPELFHVIDDFVQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLA
GAIYMDSRMSLETVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPETAKFSPAERTYDG
KVRVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLKANQPQVQNN
NT seq
5721 nt
NT seq
+upstream
nt +downstream
nt
atggctggcctacagcttgttacccctgccacctcacccatggggcctttctttggtctt
ccatggcagcaggaggctattcatgataacatttatacacctagaaaatatcaggttgaa
cttcttgaagcagctcttgaacgcaataccatcgtctgcttgaatactggctcagggaag
accttcattgcagtacttctaacaaaagagctcntccaccaaatacgtggaccttaccaa
gaaaacgcgaagaggactgtttttctagtgaacacagcttcttctgtagttcagcaagca
gctgcagtcaggactcactctgacctcagtgtgggagagtatacagatctggaggagacc
ttagcgtggactgaccaacggtggagtcgagagataatagaaagtaaggtgctggtcatg
acttgccacatattccttcatgttctgaagaataaaatcttaccattgtcgaaaatcaac
ttggtggtgtttgatgactgccacctggccatcacagaccacccttactgtcagataatg
aagctgtttgagggctgctcctgcactcctcgtatcctcggtctcacagcttccattctg
aatggaaagtgtgacccatcagaactggagcagaagattcagaatctggaaagaatcctt
aagagcaatgctgaaactgccaccgatcttgtggtcctggacagatacgcctctcagcca
agagaagtggtgttggactgcggttcctatgtggacaagagtggcctctcctcccgtttg
caggctgaactcaatgaagctcttcacttcctgaatgactgcaacatatctgtggtcaag
gaggaccgtgatcccacattcatctccaaacaggtcctcaatgactgccgggccgtactg
caggtgctggggccctggtgtgcagataaggcagcaggcataatggtgcgcgagcttcag
aagtacatcaaacatgagcaggaggagctcagccgcaagtttctactcttcacggacact
attctgcgcaaagtgcacgctctctgtgaggagcacttctcccccgcctgcctggacctc
aagtttgtcacgccaaaggtcctacggctgcttgagatcctgcacgaatacaagccgttt
gagcggcagcagtttgaaagtgtggagtggtacaacaaccgcaaccaggacaactacgtg
tcctggagcgactctgaggatgaagatgaggatgaagaggtggaagccaaagagaggcct
gaagctaactttccctctccattcaccaatatcctgtgtggaatcatctttgtggagagg
cgttatacagctgttgtcctcaatcgtcttatcaaggaggcagggaagcaggacccagag
cttgcttatataagcagcaacttcatcacaggccacagtattggcaagaaccaggcacgc
aacaagcaaatggaggtggagttcaggaagcaagaggaggttcttcgcaaattccgggct
catgaaactaaccttctgattgccaccagcatcgttgaggaaggcgtagatattccaaaa
tgtaacttggtggtgcggtttgacttgcctacggagtacaggtcctacgtccagtccaaa
ggcagagctagggcacccgtctccaactacatcatgctggctgacactgggaggaccaaa
gcctttgaagaagatctcagtacctacaaggccatagaaaaaatattaaggaataagtgc
tccaagtcagtggaggtgagtgagtttgaagtggaacaggtgatggatgatgacaacatc
ctaccaccgtatgttctgcggtctgaggatggaggtcctcgagtcaccatcaacacggcc
atcggacacattaacaggtattgtgctcggctgcccagcgacccattcactcacctagca
ccaaaatgtaaaaccgtagagatgggggatggatatttccagtctacactctacttgcct
ataaactcccctctgcgagttcctgtcaagggtccagtgatgaattgtgccagactggca
gagaaagcggttgcactagtatgctgtgagaaactccacaaaataggtgaactggatgat
cacctgatgcccgtgggaaaggagacggtaaaatacgaggaggaacttgatcttcacgat
gaggaggagaccagtgtcccaggccggcctggttctaccaagagaaggcagtgctacccc
aaagccataccggagtgtctgtgtgactgttatgcagtaccggagcagagctactacctg
tatgtgattgggatggtgctcaccactcccctcccagatgagcttaatttccgtagaaga
aagctctacccgccagaggacaccactaggtgcttcggcatactgactgccaaacccata
cctcgaattccccatttcccggtgtacactcgctctggtgaggtgaccatctccatcgag
ttgcagaagtctggcttcacgctcaccactgcccagctcgacctcatcactcgtctccac
cagtacattttctcccatattctccgcctggagaaacctgcactggagttcatgcccaca
atggctgactctgcttactgtgttctacctctgaatgttgttggagactccaacacacta
gatatggattttaagtttatggaggacattgagaagtctgaggcccgcactggcattcct
actactcagtacaccaagcagaaccccttcacctttaagctggaggactaccaggatgct
gtcatcattccaaggtatcgcaacttcgaccagcctcatcgcttctatgtcgctgatgtg
tacacagacttgacgccactcagcaagtttccttcgccagagtatgagactttcgctgag
tactacaaaacaaagtacaacctggacttgtctaaccttaaccagccactcctggatgta
gaccacacctcctctagactaaacctgttaacccctcgacacctaaaccagaagggcaaa
gccctgccgctcagcagtgcagagaagaggaaggcaaagtgggagagtctacagaacaaa
cagatcctggttccagaactgtgtgccatccaccctattccagcctccctgtggagaaaa
gcagtgtgtctgcccagcattctttaccgcctacactgcctgttgactgctgaggagctc
agagctcagacagctagtgaggctggagtgggagtccagaccctcccccctgacttcaga
tatccaaacctggactttggctggaaaaggtctattgacagcaaaaccttcatatcctgc
cctgagtcctgcagtgaggaaggtgccagtcactgtaagcaccaagagactataagccct
gatcccagttctctaatgcttcccagtggtgagcactcttccatgcctgagcaggaggac
ttcaaagctttagattctgaagaagtcccctgcaccaggaacctaactaatggcactgcc
ttcgttgctagctgtgatgatggcaaccaaaatgagcaccttccccaatgtgacaattgc
caatgctcccagctcagctttgctaagctgcagagctccaaatcagtacaaagcactacc
tcagttcttgtgcagccccctcacaccttgaagaagcccaactccagtcctccacagcct
agtgatgaatgtacatcggggaggacttcagaccacacaaaaaaagctacctcagtctgc
agccaagcagccacgagtcccaacactcccacagcaccttctgatgtctgtgctgatccc
cagcatggatcccacgcagcaaactcccccaagaacttggggcccaaccctggtctcatc
ctgcaggccctgaccctgtctaatgccagcgacggcttcaacctggagcgtctggagatg
ctcggcgactctttcctgaagcatgccattactacatacctgttctgtacctaccctgat
gctcacgaaggacgtctcagctacatgcgcagcaagaaggtgagtaactgtaacctgtac
cgtctgggaaagaagaaagggcttcctagcagaatggtggtgtccatcttcgaccctcca
gttaactggctgcctcctggatatgtggtcaaccaggacaagagcagcaccgacagactt
aattcagaggaggccaaagaggagcttttggctaacgggagatctggacacgaatatgat
gaggatgatgacgagggcgaggatgtagatgaagatggcgagctgatgctgaaagatgag
ccaaaagatgaagtgaacatggaggatgatcttgagtattacaaggagcacatccgcttc
attgacaacatgttgctgggatctggagcatttgggaagaagatctcattgagtggcttc
cctcccaatcttactccagcttcaggctcctcaccagctatggaatctccgtatgattgg
aaaacccccaagaagcccccccatccaaccgcagctcattaccccacagagcaggtgccc
agtgggccctcacctgaggagtttgactacagctcgtgggatgcaatgtgctacctggac
cccagcaaggccggcgaggaggatgactttgtggtaggcttttggaatccatcggaagag
aactgtggcactgagctcggtaagcagtccatatcctacgacctgcatacagagcagtgc
atcgcagacaagagcatcgctgactgtgtcgaggctctgctaggttgctacctgaccagc
tgtggagagagagctgcacaaatgttcctgtgttcattgggcctcaaggttttaccattg
gagagagggacgctgactggagcagtggcacaggttcacactcatactcaagttgcagac
ctgtgttacggctggctcaagatcccaccccgctgcatgctggaccatccagatgcagaa
cgaactctcaaccacctcatatctggctttgagaactttgaaaaaaagatcaactacact
tttaagaacaaggcttatctcctgcaagccttcactcacgcttcctaccattataacacc
attacagattgttaccagcggctggagtttcttggcgatgcaattctagactacctcata
acaaagcacctttacgaagacccacggcagcactctcctggagtactgactgacctgcgc
tcagcgctcgtcaacaacaccatctttgcctctctggctgttaaatacgattatcacaag
tacttcaaggccatctcgccagagcttttccacgtcatcgatgactttgtgcagtttcag
ctggagaagaatgaaatgcaaggcatggactctgagctgcggcgctccgaagaagacgaa
gagaaggaggaggacattgaagtccctaaggccatgggagatatctttgagtcgctagct
ggagcaatttacatggacagcaggatgtcattggagactgtgtggcaagtgtattatcca
atgatgaggccacttatagagaaattctctgccaatgtgccacgctctcctgtgagagag
ctgctcgagatggaaccagaaactgcaaagttcagccctgcagaaaggacatatgatggg
aaagtccgcgtgacagtggaggtcgttggaaagggcaagtttaaaggtgttggccgcagc
taccggattgccaagtcggcggcggcgcgacgagctctgcgcagcctcaaagccaatcaa
cctcaggttcaaaacaattga
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