KEGG   Oreochromis niloticus (Nile tilapia): 100706908
Entry
100706908         CDS       T06104                                 
Symbol
sox13
Name
(RefSeq) transcription factor SOX-13
  KO
K09269  transcription factor SOX5/6/13 (SOX group D)
Organism
onl  Oreochromis niloticus (Nile tilapia)
Brite
KEGG Orthology (KO) [BR:onl00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:onl03000]
    100706908 (sox13)
Transcription factors [BR:onl03000]
 Eukaryotic type
  beta-Scaffold factors with minor groove contacts
   HMG SOX
    100706908 (sox13)
SSDB
Motif
Pfam: HMG_box HMG_box_2 AAA_23
Other DBs
NCBI-GeneID: 100706908
NCBI-ProteinID: XP_005450157
Ensembl: ENSONIG00000020233
LinkDB
Position
LG5:34310248..34338352
AA seq 664 aa
MTCVSRSLPVLPVRERCWISSLPLCTTRMVEPSPPALHIHSSGDVNMAGVGVKVEREDSG
GGAAVDTSVELRKTSPSRDWSGTQHLEARQLTPPLSRSPSEGSPGKDLPHRQSPMGLKEP
RMHDRSEGQSNLKEVMPTIEKLLNADWKEKLLDKSTVGAGQLKGTPESLAEKELQLLMMI
NQLSGLREQLLGAHSEQRNMAALLLEKQQQQMELARQQQEQIAKQQQQLIQQQHKINLLQ
QQIQQVNMPYVMIPAFHPTTQPLQVNSDPQMTLPLQPIPCKPTMDYSMQLLSNTHPTPVK
RSSGSLRQEASQPLNLTSKPKGLELGKTPSPQSLELGSLALQGAYRPRDLQREISHSPPR
SALSFLGDGDVVTQAIHDAQQLLRSHGSAGRERDRDREREVGGKAEFKVSPRNERMSQSE
RGEDRHGLPSTEDHLSSDSEGTLNISVPGGYAEARPPPSSGHIKRPMNAFMVWAKDERRR
ILQAFPDMHNSSISKILGSRWKAMSNQEKQPYYEEQARLSRQHLERYPDYKYKPRPKRTC
IVEGRRLRVGEYKAMMKSRRQEQRGTYGHSQTEPQQIHYPHSDGQYPGGSSSVSVATMPF
HPALLEHYLPQVPPVPRRAEGQATPTSLPRERERERERERPPYSEGEESDGGERSEGELV
LLTD
NT seq 1995 nt   +upstreamnt  +downstreamnt
atgacctgtgtcagcagatctcttccagttcttccagtcagggagcgctgttggatctcc
tcgcttccactctgcactaccagaatggttgagcccagccctccagcacttcacattcac
tccagtggggatgtcaacatggcaggcgttggtgtcaaagtagaacgtgaagactcaggg
ggaggggctgcagtggataccagcgtcgaacttcgtaagacgtctccttcgcgtgattgg
tcaggaactcagcaccttgaggctcgccagttgaccccaccactgtctcgctccccttca
gagggatctccaggtaaggacctgcctcacagacagagccccatgggactgaaggaacct
aggatgcatgatcgatcagagggacaatccaacttgaaagaagtgatgcctaccattgag
aagctgctgaatgctgactggaaggagaaactactggataaaagcacagtgggggcagga
cagctgaaaggtacccccgaatctctggcagagaaggagctccagctgttgatgatgatc
aaccagctgagtggtctgagggagcagctcctgggagcccactctgagcagagaaacatg
gccgccctgttgctggagaaacagcagcaacagatggagctggctcggcaacagcaagaa
cagattgccaagcagcagcagcagctcatccagcagcagcacaagatcaacctgcttcag
cagcagatccagcaggtgaacatgccctatgtgatgattccagctttccaccccaccacc
caacccctccaggtcaactctgacccccagatgaccttgccactgcagccgatcccctgc
aagccgactatggactactccatgcagctactgtcaaacactcaccccacccccgtgaag
agaagcagtggttccctccgacaggaagctagtcagccgttgaacctgacctccaagccc
aagggtctggagctggggaagacacccagtccacagagcctggagctgggatcactggca
ctgcagggggcatacagacccagagatctccagagagagatctcccacagtccaccacga
tctgcgctcagtttcctgggagacggcgacgtggtcacccaggctatccacgatgcccag
cagctcctgaggagccatggcagcgcggggcgggagagggacagggaccgggagagagaa
gttggcggaaaggcggagtttaaggtctctcctcgcaatgagaggatgtctcagagtgag
agaggtgaggacagacatggcctgccgtccactgaggaccacctcagcagtgattctgag
ggtaccctgaacatttccgtcccaggcggctacgctgaggcacggccccctccctcctca
ggccacataaagagaccgatgaatgcctttatggtgtgggccaaggacgaacgcaggagg
atcctgcaagctttccctgacatgcacaactcctccatcagcaagatcctgggctccagg
tggaaagccatgtctaaccaggagaagcagccttactacgaagagcaggcgaggctgagc
aggcagcatctggagcgctaccccgactacaaatacaaaccccggcccaaacggacctgc
atagtggagggacgacggctgcgggtgggcgagtacaaggccatgatgaagagccgccgg
caggaacagagagggacctacgggcacagtcaaacggagccacagcagatccattacccc
cacagcgatggccagtacccggggggtagcagctcggtctctgtcgctaccatgcctttt
caccctgcgctactggagcattacctgccgcaagtcccgcccgtcccccgcagagctgag
ggacaggccacgcccacctctctgcctagggagagagagcgggaacgcgagagggagcga
ccgccatacagcgaaggagaggaaagtgatgggggggagaggagtgagggggaactggtg
ctccttacggactaa

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