Oreochromis niloticus (Nile tilapia): 100706908
Help
Entry
100706908 CDS
T06104
Symbol
sox13
Name
(RefSeq) transcription factor SOX-13
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
onl
Oreochromis niloticus (Nile tilapia)
Brite
KEGG Orthology (KO) [BR:
onl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
onl03000
]
100706908 (sox13)
Transcription factors [BR:
onl03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
100706908 (sox13)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
AAA_23
Motif
Other DBs
NCBI-GeneID:
100706908
NCBI-ProteinID:
XP_005450157
Ensembl:
ENSONIG00000020233
LinkDB
All DBs
Position
LG5:34310248..34338352
Genome browser
AA seq
664 aa
AA seq
DB search
MTCVSRSLPVLPVRERCWISSLPLCTTRMVEPSPPALHIHSSGDVNMAGVGVKVEREDSG
GGAAVDTSVELRKTSPSRDWSGTQHLEARQLTPPLSRSPSEGSPGKDLPHRQSPMGLKEP
RMHDRSEGQSNLKEVMPTIEKLLNADWKEKLLDKSTVGAGQLKGTPESLAEKELQLLMMI
NQLSGLREQLLGAHSEQRNMAALLLEKQQQQMELARQQQEQIAKQQQQLIQQQHKINLLQ
QQIQQVNMPYVMIPAFHPTTQPLQVNSDPQMTLPLQPIPCKPTMDYSMQLLSNTHPTPVK
RSSGSLRQEASQPLNLTSKPKGLELGKTPSPQSLELGSLALQGAYRPRDLQREISHSPPR
SALSFLGDGDVVTQAIHDAQQLLRSHGSAGRERDRDREREVGGKAEFKVSPRNERMSQSE
RGEDRHGLPSTEDHLSSDSEGTLNISVPGGYAEARPPPSSGHIKRPMNAFMVWAKDERRR
ILQAFPDMHNSSISKILGSRWKAMSNQEKQPYYEEQARLSRQHLERYPDYKYKPRPKRTC
IVEGRRLRVGEYKAMMKSRRQEQRGTYGHSQTEPQQIHYPHSDGQYPGGSSSVSVATMPF
HPALLEHYLPQVPPVPRRAEGQATPTSLPRERERERERERPPYSEGEESDGGERSEGELV
LLTD
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atgacctgtgtcagcagatctcttccagttcttccagtcagggagcgctgttggatctcc
tcgcttccactctgcactaccagaatggttgagcccagccctccagcacttcacattcac
tccagtggggatgtcaacatggcaggcgttggtgtcaaagtagaacgtgaagactcaggg
ggaggggctgcagtggataccagcgtcgaacttcgtaagacgtctccttcgcgtgattgg
tcaggaactcagcaccttgaggctcgccagttgaccccaccactgtctcgctccccttca
gagggatctccaggtaaggacctgcctcacagacagagccccatgggactgaaggaacct
aggatgcatgatcgatcagagggacaatccaacttgaaagaagtgatgcctaccattgag
aagctgctgaatgctgactggaaggagaaactactggataaaagcacagtgggggcagga
cagctgaaaggtacccccgaatctctggcagagaaggagctccagctgttgatgatgatc
aaccagctgagtggtctgagggagcagctcctgggagcccactctgagcagagaaacatg
gccgccctgttgctggagaaacagcagcaacagatggagctggctcggcaacagcaagaa
cagattgccaagcagcagcagcagctcatccagcagcagcacaagatcaacctgcttcag
cagcagatccagcaggtgaacatgccctatgtgatgattccagctttccaccccaccacc
caacccctccaggtcaactctgacccccagatgaccttgccactgcagccgatcccctgc
aagccgactatggactactccatgcagctactgtcaaacactcaccccacccccgtgaag
agaagcagtggttccctccgacaggaagctagtcagccgttgaacctgacctccaagccc
aagggtctggagctggggaagacacccagtccacagagcctggagctgggatcactggca
ctgcagggggcatacagacccagagatctccagagagagatctcccacagtccaccacga
tctgcgctcagtttcctgggagacggcgacgtggtcacccaggctatccacgatgcccag
cagctcctgaggagccatggcagcgcggggcgggagagggacagggaccgggagagagaa
gttggcggaaaggcggagtttaaggtctctcctcgcaatgagaggatgtctcagagtgag
agaggtgaggacagacatggcctgccgtccactgaggaccacctcagcagtgattctgag
ggtaccctgaacatttccgtcccaggcggctacgctgaggcacggccccctccctcctca
ggccacataaagagaccgatgaatgcctttatggtgtgggccaaggacgaacgcaggagg
atcctgcaagctttccctgacatgcacaactcctccatcagcaagatcctgggctccagg
tggaaagccatgtctaaccaggagaagcagccttactacgaagagcaggcgaggctgagc
aggcagcatctggagcgctaccccgactacaaatacaaaccccggcccaaacggacctgc
atagtggagggacgacggctgcgggtgggcgagtacaaggccatgatgaagagccgccgg
caggaacagagagggacctacgggcacagtcaaacggagccacagcagatccattacccc
cacagcgatggccagtacccggggggtagcagctcggtctctgtcgctaccatgcctttt
caccctgcgctactggagcattacctgccgcaagtcccgcccgtcccccgcagagctgag
ggacaggccacgcccacctctctgcctagggagagagagcgggaacgcgagagggagcga
ccgccatacagcgaaggagaggaaagtgatgggggggagaggagtgagggggaactggtg
ctccttacggactaa
DBGET
integrated database retrieval system