Oreochromis niloticus (Nile tilapia): 100707259
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Entry
100707259 CDS
T06104
Symbol
polr1b
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA2
KO
K03002
DNA-directed RNA polymerase I subunit RPA2 [EC:
2.7.7.6
]
Organism
onl
Oreochromis niloticus (Nile tilapia)
Pathway
onl03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
onl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
100707259 (polr1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
onl03021
]
100707259 (polr1b)
Enzymes [BR:
onl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
100707259 (polr1b)
Transcription machinery [BR:
onl03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
100707259 (polr1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpa2_4
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
Birna_RdRp_palm
Motif
Other DBs
NCBI-GeneID:
100707259
NCBI-ProteinID:
XP_019222463
Ensembl:
ENSONIG00000010382
UniProt:
I3JW02
LinkDB
All DBs
Position
LG13:25919624..25926869
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AA seq
1134 aa
AA seq
DB search
MDFSSKWSDLPKGPSLKNLTDGSFGHMKDTQHAAIQDLTKAHIESFDQAVIDGLNRVVQA
IPPLEFMFKNERISLGFVEAAIQNPVVAKGNICKEMKVFPAECRGRRCSYKGKIVADVSW
SINGVPKGIIKQSLGHVPIMVKSKLCNLHGMSPKELVEHHEEAEEMGGYFIVNGIEKVIR
MLIMPRRNYPIAMSRPKWKNRGQGYTQYGISMRCVREEHTAINMNLHYLENGTVMLNFIY
QKELFFLPLGFALKALVDFTDFQIYQELIKGREDNSFYKTCVSEMLRIVTEENCTTRSKV
LNYLGERFRVKMNLPEWYTNEQCANFLLNECICIHLKSDVEKFYLLCLMTRKLFTFAKQE
CMEENPDSIVCQEVLTPGQLYLMFLKERLTAWLVSVKLSFDKRGSKVTGGWSSEMMIKML
NMGTDLTRSFEYLLATGNLQSKTGLGMLQNTGLCVVADKLNFIRYLSHFRCVHRGAAFAK
MRTTSVRKLLPESWGFLCPVHTPDGEPCGLMNHMTASCEIVALTLSTTSLPGLLCSLGVT
PVDGTPGRAFADCYPVVLDGAVVGWVEADLAPVVVESLRRFKVLREKKIPPWTEIVLVPK
TGKASLYPGLFLFTTPCRMVRPVQNLAFGKQELIGTFEQLYINVGILENEIEPRVTTHQE
LFPHSMLSVVANFIPYSDHNQSPRNMYQCQMGKQTMGFPLHSFMDRSDNKLYRLQTPQSP
LVRPYMYDHYGLDNYPSGTNAIVAVISYTGYDMEDAMIVNKSSWERGFAHGSIYKTELVD
LAEKVKGEDGVVFGTKPGDPKVKEKLDADGLPFIGSVLQYGDPFYSYINLNTGQTFISYY
KSQEACIVDNIKVCSNDGGSGRFKRVCITVRVPRNPTIGDKFASRHGQKGILSRLWPAED
MPFTESGMTPDILFNPHGFPSRMTIGMLIESMAGKSGALHGLGHDATPFTFSEENSALDY
FGELLRAGGYNYYGTERLYSGLSGQELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKV
TNQPVGGRNVQGGIRFGEMERDALLAHGSSFLLHDRLFNCSDRSVAQVCVDCGSLLSPLL
EKPPPYWSSMRHRKTVCTLCGKSDSVDSVSVPYVFRYFVAELAAMNIKVKLEVK
NT seq
3405 nt
NT seq
+upstream
nt +downstream
nt
atggatttttcaagtaagtggagtgatcttcctaaaggtccgagtctgaaaaatttgaca
gatggaagctttggccacatgaaggacacccagcatgctgccattcaggatctgaccaaa
gctcacatcgagtcgtttgaccaggcggtcatagacggactcaaccgcgttgtgcaggcc
atcccccccttagagttcatgttcaaaaatgaacggatcagccttggtttcgttgaagct
gccatccaaaacccagtggttgccaaagggaacatctgcaaggaaatgaaggtgttccca
gcagagtgccggggaagaagatgctcgtacaaagggaaaatagtggcagacgtcagctgg
tcgatcaacggagttcccaaaggcatcatcaagcagtctctgggtcatgtgcccatcatg
gtgaagtccaagctgtgtaacctgcatggcatgtcccccaaagagctcgtagagcatcac
gaagaagccgaggaaatgggaggttatttcattgtgaatggaattgagaaggttatccgc
atgctgataatgccaaggaggaactatcctatcgccatgtcaagacccaagtggaagaac
aggggtcagggttacactcagtacggtatttctatgcgttgcgtgagggaggagcacaca
gccatcaacatgaacctgcattatctggaaaacgggactgtgatgctgaacttcatctac
cagaaagagctcttcttcctcccactaggctttgcgttaaaggctctggtggacttcaca
gacttccagatctaccaggagctgatcaaaggccgcgaggacaattctttctacaagacc
tgtgtttctgagatgctgcgcatcgtcacggaggagaactgcaccacccgcagcaaggtg
ctcaattacctcggagagcgcttcagggttaagatgaacctccctgagtggtacacaaat
gaacagtgtgccaacttcttgttaaatgagtgtatctgcatccacctgaagtcagatgtg
gagaagttctacctgctgtgtctgatgacaaggaagctcttcacttttgccaagcaggag
tgcatggaagaaaaccccgacagcatcgtgtgccaggaagtgctcactcctggtcagctc
tacctcatgtttctgaaggagagactgactgcatggttggtgtctgtgaagctgtccttt
gacaagagaggcagcaaagtgaccggaggatggagctctgaaatgatgataaagatgctc
aacatgggaactgacttgaccagatcatttgaatatctgctggccaccggaaacctccag
tctaagacaggtctgggcatgctgcagaacaccgggctgtgcgttgtagctgacaagctg
aacttcattcgctacctgtctcacttccgctgcgtgcacagaggagcagcgttcgctaag
atgaggaccacctctgtgcgtaagctgctgcccgagtcctggggcttcctgtgtcctgtc
cacactccagacggcgagccttgtggactcatgaaccacatgacagccagctgtgaaatt
gtggcattgaccttgtccaccacgtcactgcctggtctgctctgttcgcttggtgtcact
ccagtggatggaactcctggccgggcctttgcagactgctaccctgtggtcctggacggt
gctgttgttggctgggtggaggctgacttggctccagttgtggttgaatcactgcgcagg
ttcaaggtgttaagagagaagaagattcctccctggacagagattgtcctggttcccaaa
acaggcaaggccagcttatatccaggcctgttcctcttcacaacaccttgtcgcatggtg
cggcctgtacagaacttggcttttggcaagcaagagttgattggcacctttgaacagctt
tacatcaatgtcggaatcttggagaatgagattgaaccaagagtaaccacacaccaggag
ctcttccctcacagtatgctcagtgtggtggcaaacttcatcccatactcggaccacaac
cagagtcccaggaacatgtaccagtgtcagatgggtaagcagactatgggcttcccgcta
cactctttcatggatcgctctgataacaagctgtaccggctccagaccccacagagccca
ctagtcaggccttatatgtacgaccactacggccttgacaactaccccagcggcaccaac
gccatcgtggccgtcatatcctacacaggctacgacatggaagatgccatgattgtgaac
aagtcgtcatgggagagaggctttgcccatggaagtatctacaagacggagctggtggac
ctggcagagaaggtgaagggagaagatggcgtggtgtttggaaccaagccaggcgacccc
aaagtgaaagaaaaactagacgctgatggactgcctttcatcggatcggtgcttcagtat
ggagaccctttctacagctacatcaacctcaacactggacagacctttatctcctactac
aagagtcaggaggcctgtattgttgacaacataaaggtctgcagtaatgacggcggctca
ggccgcttcaagcgtgtctgcatcactgtacgagtgccccgaaatcccaccatcggtgac
aagtttgccagccgccacggacagaagggcatcctgagccgcctgtggccggcggaggac
atgcccttcacagaaagcgggatgactccggacatcttgttcaacccccacggcttcccc
tcccgtatgacaatcgggatgctcattgagagcatggccggcaagtcgggcgccctacac
ggccttggccacgacgccacacccttcaccttttccgaggagaactcggcgctcgattac
ttcggcgagctgcttcgggcgggcggctacaactactacggtacggaaaggctgtacagc
ggactgagcggtcaggagctagaggcggacatcttcatcggcgtggtttactaccagcgg
ctacgtcacatggtctccgacaagtttcaagttaggacgacaggagcacgagacaaagtg
accaatcagcctgtaggaggaaggaacgtgcagggaggcatccgtttcggggagatggag
cgagacgccctgctggctcacggctcttcgttcttacttcacgatcgcctcttcaactgc
tcagaccgctcggtcgctcaggtgtgcgttgactgtggcagccttctctcccctctgttg
gagaaaccgccgccctactggtcatccatgcgccaccgtaagactgtctgcaccctgtgt
ggcaaaagtgactcggttgactcggtgtctgttccttatgtcttccgctactttgtagct
gagcttgctgcaatgaacatcaaagtcaaattagaagtcaagtga
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