Oreochromis niloticus (Nile tilapia): 100707328
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Entry
100707328 CDS
T06104
Symbol
sf1
Name
(RefSeq) LOW QUALITY PROTEIN: splicing factor 1
KO
K13095
splicing factor 1
Organism
onl
Oreochromis niloticus (Nile tilapia)
Pathway
onl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
onl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100707328 (sf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
onl03041
]
100707328 (sf1)
Spliceosome [BR:
onl03041
]
Complex A
Other components
Complex A specific factors
100707328 (sf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF1-HH
KH-I_KHDC4-BBP
KH_1
zf-CCHC
KH_12
zf-CCHC_3
Motif
Other DBs
NCBI-GeneID:
100707328
NCBI-ProteinID:
XP_013122789
Ensembl:
ENSONIG00000015728
LinkDB
All DBs
Position
LG3:3512507..3524919
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AA seq
680 aa
AA seq
DB search
MATGANATPLGKLHPSIGAKRAFDAGPGAGNGLMPTPGPPGSFPSLQGFQPSMPSASFPQ
SHQFNPGTSFSSQAQQQSAAGSGMAKPDFGQKKPRKKSRWSSETPDQKTVIPGMPTVIPP
GLTRDQERAYIVQLQIEDLTRKLRTGDLGIPVNPEDRSPSPEPIYNSEGKRLNTREYRTR
KKLEEERHALITEMVGLNPDFKPPADYKPPATRVNDKVMIPQDEYPEINFVGLLIGPRGN
TLKNIEKECCAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTMENVKKAVEQI
RNILKQGIETPEDQNDLRKMQLRELARLNGTLREDDNRILRPWQNSEPRSITNTTLCTKC
GGAGHISSDCKYSSSFAAHRATGGEPPQSAQDKARMDKEYLSLMAELGEAPVPTSAGGHT
STQGAPRAAGPNSTQPPPNRPPWMSSGPAESRNFHGMPGGPGGPGGPGGPHSFPPPMPSM
GGPPMPPNPNGLPPPWMQPPPPPMGQGPGPHGHPMGLLPPPMGMMPPPPPPPSSQPPPPP
SGPLPPWQQQAPPPPPTSSMATSTPLPWQQNTTTTSSPATGTLPPWQQPQQPAASGAQPP
PPMGTPSMVPPPPGVQPPLPPXAPPPPPPPPPGSTGVMYAPPPPPPPMDPSNFVTMMGMG
VPGMPPFGMPPXPPPPPPQN
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgggagcaaatgcaactccattagggaagttgcacccgagtattggcgctaaa
cgagcctttgatgccgggcctggtgcggggaacgggctgatgccaacaccggggccgccc
gggtcctttccttctctacaaggcttccagccttcgatgccaagcgcatcttttccccag
tctcatcagttcaacccggggacaagtttttcgagtcaagctcaacagcaatctgctgcg
gggagcggaatggctaaacctgatttcggccagaagaagccaagaaagaagagtcgttgg
agcagcgagacgcctgatcagaagaccgtcataccgggcatgcccaccgttatcccaccc
ggactgacccgggatcaggagagagcatatatagtccaactgcagattgaagacctgact
cgtaaactgcgtacaggagacctgggaatccctgttaaccctgaggacaggtctccttct
cctgagcccatctacaacagcgagggcaagaggttaaacacccgcgagtatcgcacacga
aagaagctcgaggaggagcgtcatgcgcttatcactgaaatggttggactcaaccctgac
ttcaagcctcctgcagactacaagcctccagccaccagagtcaatgacaaagttatgatc
cctcaagatgaataccctgaaatcaactttgttggtctgctcattggaccccgtggtaat
acattgaagaacattgagaaggagtgctgtgccaagattatgatccgggggaaagggtct
gtgaaggaggggaaggttggtcgaaaagatggccagatgctgccaggggaggacgagcct
ctgcatgccctggtcactgccaacacgatggagaacgtcaagaaagctgtggagcagatt
cgtaacattttgaaacaaggcattgagacgcccgaggatcagaatgacctaagaaaaatg
cagctcagggagctggccagactcaatggcacactgagggaagacgacaacaggattctt
cgtccttggcagaactctgagccacgcagcattactaacaccaccctctgcactaaatgt
ggtggagccggccatatctcctcagactgcaagtacagcagctcgtttgctgcacacaga
gcaactggtggagagccccctcagtcagctcaagacaaggctcgtatggacaaggagtat
ctgtctctcatggctgagctgggggaggcccctgtcccaacgtcagccggaggacacacc
agcacccagggcgcacctcgggctgcaggccccaacagcacccaacctccaccgaaccgg
cctccgtggatgagttctggtccagctgagagcaggaactttcacggcatgcccggaggg
cccgggggccccggtggtcctggaggacctcacagtttccctccgccgatgcccagcatg
ggaggaccgcctatgcctcccaaccccaatggcttgcctccaccctggatgcagccccct
cctcctcccatgggccagggacctggaccgcatggacacccaatgggtctgctgccacct
ccaatgggtatgatgccacctccacctcctcccccaagcagccagccacctcctccccct
tcaggtcctctgccaccttggcaacagcaggctccacctccccctccaaccagcagcatg
gcaactagcacaccactgccctggcaacagaacaccaccaccacatctagccccgccacc
ggcaccctgcctccatggcaacagccccagcagcctgcagcctctggagcccagcccccg
ccacccatgggtaccccgtccatggtgcctcctccacctggggtccagcccccactgccc
ccgngcgctccaccaccaccacctcctcctcctccaggctccacgggcgtgatgtatgcc
ccaccaccgcctccaccacccatggacccctctaactttgtcacaatgatggggatgggg
gtaccgggcatgcccccttttggcatgcctcctngcccccctccccctccccctcagaat
taa
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