Oreochromis niloticus (Nile tilapia): 100707545
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Entry
100707545 CDS
T06104
Symbol
prpf40a
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
onl
Oreochromis niloticus (Nile tilapia)
Pathway
onl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
onl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100707545 (prpf40a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
onl03041
]
100707545 (prpf40a)
Spliceosome [BR:
onl03041
]
Complex A
U1 snRNP components
U1 related factors
100707545 (prpf40a)
Complex B
100707545 (prpf40a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
Motif
Other DBs
NCBI-GeneID:
100707545
NCBI-ProteinID:
XP_003447469
Ensembl:
ENSONIG00000008986
UniProt:
I3JR05
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All DBs
Position
LG16:complement(14563469..14578046)
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AA seq
879 aa
AA seq
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MSSSEANNGPSQAPPYPGVPPAAIPPPFMGPPGIPPHFPPIGMPPMGQRPPSMTPMPPGI
IPPGIMPPMGAPPMGQMPGMMPPMMPGMMMPPRIPAAAVQPTGPPGVDSTAAAPGTSSTT
NGSPQEEQPKKKSVWTEHKSLDGKTYYYNTETKQSTWEKPDELKSPAEQMLSKCPWKEYK
SDTGKPYYYNSQTKESRWTKPKELEDLEAMIKAEENGTAEAAAPGTTAAPAVQADNVAPA
ATVVEAETAVVVSEEQPSQAAVTQTAEVKTADAPVASSETSVATEAVASVEVVKEERPEL
QKKTYKWNTKEEAKQAFKELLKEKGVSSNSSWEQAMKLIINDPRYSALPKLSEKKQAFNA
YKVQTEKEEKEEARIKYKESKETFQRFLENHEKMTSTTRYKKAEQMFGELEVWSCVPERD
RLEIYEDVLFYLAKKEKEQAKQLRKRNWEALKNILDNMANVTYRTTWSEAQQYLLDNPTF
AEDEELQNMDKEDALICFEEHIRALEKEEEEEKQKTLLRERRRQRKNREAFQKFLDELHD
HGQLHSMSAWMEMYPTLSSDIRFANMLGQPGSTPLDLFKFYVEDLKARYHDEKRIIKDIL
KDKGFLVEVNTSFDDFGSVISSDKRATTLDAGNIKLAFNSLLEKAEAREREREKEEARKM
KRKEAAFKNMLKQATPPLEPETTWEGVRERFLKEPAFEDVTLESERKRIFKDFMHVLEHE
CQHHHSRTKKHSKKSKKHHRKRSRSRSGSESEDEEYHKKKKRSQSKSPSERSSSGESERS
YKKSKKHKKKGKKRRHKSASPDSDNEKKGRDRDGKREKEVEKEKENDKSRGKSRSESKQK
SPKRKAAKEEGGWDTSGSELSEGELEKRRRNLLEQLDAP
NT seq
2640 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcatcggaagctaataatgggccgagccaagcaccaccttatccaggtgtaccg
cccgcggcgatacctcccccatttatgggaccacctggaataccgcctcatttccctccc
attggaatgccccctatgggacagcgacctcccagcatgacaccaatgcctcctggtata
attcccccgggtataatgccaccaatgggggcaccgccaatgggacagatgccaggcatg
atgccacccatgatgccaggaatgatgatgccccctcgcataccagctgcggctgtacag
ccaacgggaccgcctggtgttgactccacagctgctgcacctggaacatctagtaccaca
aatggatccccgcaggaagaacagccaaagaagaaatccgtgtggactgaacataaatca
ctagatggaaagacctattattataacacagagactaagcaatccacatgggagaaacca
gatgaactcaaatctcctgcagagcaaatgctgtcaaaatgcccctggaaggagtacaag
tcagacacagggaagccttattattacaactctcagacaaaggaatcaagatggacaaaa
cccaaagagctggaggacctggaagctatgatcaaagcagaggagaatgggactgcagag
gcagcggctcctggaaccactgcagctcctgctgtgcaagcagataatgtagctcctgca
gcgactgtagtggaggcagaaactgcggtagtagtctcagaggaacaaccatcccaggca
gcagtgactcaaacagctgaggtgaagacggctgatgcacctgtggcttcctctgagact
tcagtggctactgaggctgtagccagtgtcgaggttgtaaaagaagaaaggccagaactt
cagaagaaaacatacaaatggaatacaaaagaagaagccaagcaggccttcaaagagctg
ctgaaggagaagggcgtatcctccaactcctcttgggaacaggccatgaaattgattatc
aatgatcctcgctacagtgcacttccgaagctgagcgaaaagaagcaggcattcaatgca
tacaaagtccagacagagaaggaagaaaaggaggaggccagaattaaatacaaagagtca
aaagagacttttcagagattcttggagaaccatgaaaagatgacgtctaccactagatac
aagaaagcagaacagatgtttggtgagcttgaagtgtggagctgcgtgccagagagagac
aggctagagatctatgaagacgtgttgttctacctggctaaaaaagagaaggagcaagct
aagcagctgagaaaaaggaactgggaagctctgaagaacattttggacaacatggccaac
gtcacataccgcaccacctggtctgaggcccagcagtatctgctagataaccctaccttt
gcagaggatgaggagctgcaaaatatggacaaagaagatgcccttatatgttttgaggag
catattcgggctctggagaaggaggaggaggaagagaagcaaaagacacttctcagggaa
agaagacggcagcgcaagaatagagaggccttccagaaatttctggacgagcttcatgat
cacggccaacttcactccatgtctgcttggatggagatgtatccgacactgagctcagac
atccgctttgccaacatgctgggccagccgggttccactcccctggacctcttcaaattt
tatgtggaagacttgaaagcacgctatcatgatgaaaagaggataatcaaagatattctt
aaggacaaaggattcctggttgaagtcaacaccagctttgatgactttggatcagtcatc
agctcggataagagagctaccacgctggatgcaggaaatataaagctagccttcaacagt
ttgcttgagaaagccgaagccagagagagggagcgagagaaggaggaggccaggaagatg
aaaaggaaagaagctgctttcaagaacatgctgaagcaggccacaccgccactggagcca
gaaactacgtgggagggagtcagagagaggttcctaaaagagcctgcctttgaagacgtg
actctggagtcggagaggaaaagaatattcaaagatttcatgcatgtcttggagcatgag
tgccagcatcaccactcgaggaccaagaaacactcaaagaagtccaaaaagcaccacagg
aagcgctcccgctctcgatcaggctctgagtctgaggatgaggaataccacaagaagaaa
aagagatcgcagtccaaatccccctcagaacgttcatctagtggagaatctgagagaagc
tataaaaaatccaagaagcacaagaagaagggcaagaagagacgccacaagtctgcgtca
ccagattctgacaatgagaagaaaggaagagaccgtgatgggaagcgagaaaaggaggta
gagaaggagaaggagaacgacaagtctcgggggaaatctcgctcagagtccaaacagaaa
tctcccaaaaggaaagcagccaaagaggagggtggctgggacacgtcgggcagtgagctg
agtgaaggagagctcgagaaaaggagaagaaacttgctggaacagctggacgcaccttga
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