Oreochromis niloticus (Nile tilapia): 100707695
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Entry
100707695 CDS
T06104
Symbol
rxra
Name
(RefSeq) retinoic acid receptor RXR-alpha isoform X6
KO
K08524
retinoid X receptor alpha
Organism
onl
Oreochromis niloticus (Nile tilapia)
Pathway
onl03320
PPAR signaling pathway
onl04148
Efferocytosis
onl04920
Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:
onl00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
100707695 (rxra)
09150 Organismal Systems
09152 Endocrine system
04920 Adipocytokine signaling pathway
100707695 (rxra)
03320 PPAR signaling pathway
100707695 (rxra)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
onl03000
]
100707695 (rxra)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
onl03310
]
100707695 (rxra)
Transcription factors [BR:
onl03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
100707695 (rxra)
Nuclear receptors [BR:
onl03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
100707695 (rxra)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Hormone_recep
zf-C4
Nuc_recep-AF1
tRNA_bind_3
Motif
Other DBs
NCBI-GeneID:
100707695
NCBI-ProteinID:
XP_005470432
Ensembl:
ENSONIG00000013076
LinkDB
All DBs
Position
LG7:29071795..29225797
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AA seq
505 aa
AA seq
DB search
MDPFSLDVSMGFLKPQCSLAPPMQRGRSVDACSCFSGVCPLHDRRLSSDSSGQVTSSPLG
SPTSHRGMHPSLLSPTSMGPSGPLHSPISTLSSPMNGLASPFSVISSPMGPHSMNSPGMG
YGPSVSPQMFQLNSPMNSVSSTEDIKPPLGLNGVMKVPAQPSSTALSLTKHICAICGDRS
SGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCVIDKRQRNRCQYCRYQKCLAMGMKR
EVLLHAAVQEERQRAKDKNENEVESTSCANEDMPVEKILEAEEAVEPKTETYIETNLGVP
SNSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRS
IAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFN
PDSKGLSNPGEVEALREKVYASLEAYCKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLF
FFKLIGDTPIDTFLMEMLEAPHQMT
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atggaccccttctctctggacgttagcatggggttcttgaagccccagtgctctctagct
cctccgatgcagcgaggtcgctcagttgacgcttgttcctgttttagcggcgtgtgcccc
ctccatgaccgccgtctatcctcagattcatcaggccaggtgacctcttcgcccttggga
tcacctacctcccaccgtggaatgcacccatctctactcagcccaacgtccatggggccc
tcaggccctctccactctcccatcagtacgctgagctctccaatgaatggcctggcttca
cccttctctgtcatcagctcacccatgggccctcactccatgaactcgcctggcatgggc
tacggtcctagcgttagcccccagatgttccagctgaactctccaatgaactctgtcagc
agtacggaggacataaagcccccactgggcctcaacggtgtgatgaaggtgcctgcccag
ccctcgagcacagctctgtcactcaccaaacacatctgcgccatctgcggtgaccgctcc
tcaggtaaacactatggagtctacagctgcgagggctgcaagggtttcttcaaaaggact
gtccgcaaagacctgacctacacctgtcgtgacaacaaagactgtgtcattgataaacgc
cagagaaaccgctgtcaatactgtcgctaccagaagtgtttagccatgggcatgaagaga
gaagttttgttacatgcagccgttcaggaggagcgccagcgagccaaggacaaaaatgag
aacgaggtggagtctaccagctgcgccaacgaggacatgcccgtggagaagatcctggaa
gccgaggaagcagtagaacctaaaaccgagacctacatcgagaccaacctcggtgtgcca
tcaaactcgcccaacgacccagtgacaaatatctgtcaagcagctgacaaacaacttttt
accctggttgagtgggccaaaagaatcccccacttctctgagctgccgctggacgaccag
gtcatccttctacgagcaggttggaacgagctcctcattgcatcattttcgcaccgttcg
atagcggttaaagacgggattctgctggcaacagggctgcacgttcaccgcaacagcgcc
cacagtgccggagtgggagccatctttgacagagtgctgacagagctggtgtcaaagatg
agggacatgcagatggataagacagaactggggtgccttcgagctattgtccttttcaac
ccagactctaaaggtctgtccaacccaggcgaagtagaagctctgagagagaaagtctac
gcgtctttagaggcctactgcaaacagaaataccccgagcagcctggcagatttgctaag
ctgttgctgcgattgcctgcactgcgctccatcggtcttaagtgtctagagcacttgttc
ttcttcaagctcatcggtgacacgcccattgacaccttccttatggagatgctagaagcc
ccacatcaaatgacataa
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