Oreochromis niloticus (Nile tilapia): 100707795
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Entry
100707795 CDS
T06104
Symbol
xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
onl
Oreochromis niloticus (Nile tilapia)
Pathway
onl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
onl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100707795 (xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
onl03019
]
100707795 (xab2)
03041 Spliceosome [BR:
onl03041
]
100707795 (xab2)
Messenger RNA biogenesis [BR:
onl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
100707795 (xab2)
Spliceosome [BR:
onl03041
]
Complex B
Other components
Prp19-related factors
100707795 (xab2)
Complex C
100707795 (xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_12
TPR_2
TPR_8
TPR_15
TPR_16
ARM_TT21_C
NRDE-2
ARM_TT21
Tcf25
TPR_1
Motif
Other DBs
NCBI-GeneID:
100707795
NCBI-ProteinID:
XP_003442140
Ensembl:
ENSONIG00000001695
LinkDB
All DBs
Position
LG4:23560368..23567016
Genome browser
AA seq
849 aa
AA seq
DB search
MKTLNGKTDVIFEDDDLPYEEEIIRNPYSVKCWMRYIEFKQNGPKSTLNMIYERALKELP
GSYKLWYNYLRERRKQVKGKCITEPAYEEVNNCHERALVFMHKMPRIWMDYCQFLVSQCK
ITRSRRTFDRALRALPVTQHPRIWPLYLRFVRDLPLPETAIRVYRRYLKLSPENAEEYID
YLRSVGRLDEAAVRLAAVVNDENFVSKEGKSNYQLWHELCDLISQNPDKVTSLNVGAIIR
GGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAILTVVTVRDFTQVFDSYAQFEES
MIAAKMETTAEMGQDENDDIDLELRLARFEQLIARRPLLLNSVLLRQNPHNVHEWHKRVK
LYDGNPRQIINTYTEAVQTIDPMKATGKPHSLWVFFAKFYEENEQLDDARTIFEKATKVN
YKQVDDLAAVWCEYGEMELRHENYEQALRILRKATAIPSKKAEYFDASEPVQNRVYKSLK
VWSMLADLEESLGTFQSTKAVYDRIIDLRIATPQIIINYAMFLEEHNYFEESFKAYERGI
ALFKWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPAKFAKTIYLLYAKLEEE
YGLARHAMAVYERATQAVETEERHLMFNIYIKRAAEIYGVTYTRAIYQKAIEVLPDEHAR
DMCLRFADMESKLGEIDRARAIYSYCSQICDPRVTANFWQTWKDFEIRHGNEDTIREMLR
IKRSVQATYNTQVNFMSSQMLKATTSSTGTVSDLAPGQMGIDDMKMLEQKAQQLAAEAEQ
DKPKPKEKILFVRSDTSRSELAELAKQANPDEIDIDDDEDEEDEDQGPDEVQLEQKSVPT
AVFGGLKDD
NT seq
2550 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacattaaacggaaaaaccgatgtcatatttgaggacgacgatctaccttatgaa
gaggagatcatcaggaatccatattcagtcaagtgctggatgcgttacatcgaattcaaa
cagaatggaccaaaatctaccctcaatatgatatatgagcgggctctaaaagaactccct
ggcagctataagttgtggtacaattatctgagagagaggcgaaaacaagtcaaagggaaa
tgtatcacagaaccagcctatgaagaagtcaataattgtcatgaaagggcactagtgttc
atgcacaagatgcctagaatatggatggattactgccagttccttgtgtctcaatgcaag
atcacaagaagtcgtagaacatttgaccgagcacttagagctcttcctgtaactcagcac
ccacgcatctggcctctgtatctccgctttgtccgtgacttgccattgcctgaaacagcc
atccgagtgtaccgcaggtaccttaagctttctccagaaaatgcagaagaatacatagac
tacttgcggtctgttggccgcctcgatgaagcagctgtgcggctagcagctgttgtcaat
gatgaaaactttgtgtccaaagagggaaagtctaactatcaactgtggcatgaactatgt
gacctgatctcccagaatcctgacaaggtgacctctctgaatgtaggagccatcattcga
ggaggcctcactcgcttcacagatcaacttggaaaactttggtgctccttagctgactat
tacatcaggagtggccactttgagaaagcacgtgatgtctatgaagaggccatccttaca
gtagtcactgtaagggatttcacacaagtgtttgacagttatgctcaatttgaggagagc
atgatcgctgctaagatggagactacagctgagatggggcaggatgagaatgatgacata
gacctggagctaagacttgcccgctttgagcagctcattgcccggcgacccctcttgttg
aacagtgtactcttgagacagaacccccataatgttcatgagtggcacaagcgggtaaaa
ctgtatgacggaaatccacgacagatcatcaacacatacacggaggcagtccagactatt
gatccaatgaaggccacagggaaacctcactcactctgggttttctttgctaaattctat
gaggaaaatgagcagctggacgatgcgaggacaatctttgagaaggctaccaaggtgaac
tacaaacaggtggatgaccttgctgcagtgtggtgtgaatatggagagatggaacttcgt
catgagaattacgaacaggcactacgaattctgaggaaagcaacagctatcccatccaag
aaagcagagtactttgatgcttctgagcctgtccaaaacagagtctacaaatccttgaag
gtctggtcaatgctggcagacttggaggaaagtcttggcactttccagtctactaaagca
gtttatgaccggattattgatctccggattgccactccacagatcatcatcaattacgcc
atgttccttgaagagcacaactactttgaggaaagctttaaagcatatgaacgtggtatc
gctcttttcaagtggccaaatgtttacgacatctggaacacttacctcaccaagtttatt
gatcgatatgggggcaagaagttggaaagagccagagatttatttgaacaggcattggat
ggctgcccagccaaatttgctaagactatttatctactgtatgccaagttggaggaggag
tatggattggcacgacacgctatggctgtatatgaaagagcaacacaggcagtagaaact
gaggagagacatctcatgtttaacatctacatcaagagagcagctgaaatttatggagtt
acgtataccagagcaatctaccagaaggctattgaggtccttcctgatgagcatgcaaga
gacatgtgtctacggtttgctgacatggagagtaaacttggtgagattgatcgtgctaga
gcaatctactcctactgctcccagatctgtgacccaagggtgacggctaatttctggcaa
acctggaaagattttgagatccgccatggaaatgaggacacgattagagagatgttgagg
atcaaacgaagtgtccaggctacatacaacacacaggtcaactttatgtcctctcagatg
ctgaaggccacaacaagctccacaggcactgtgtcagatcttgctccaggccagatggga
attgatgatatgaagatgttggaacagaaagcacaacagcttgctgcagaggctgaacag
gacaagcctaaacccaaagagaagattctctttgtcaggagtgacacttctcgcagtgag
ctggcagaacttgccaaacaagccaatcctgatgaaatagacatcgatgatgatgaggat
gaagaagatgaagaccaaggaccggatgaggtgcagcttgaacagaagagcgtccctaca
gctgtttttggaggccttaaagatgactag
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