KEGG   Oreochromis niloticus (Nile tilapia): 100707927
Entry
100707927         CDS       T06104                                 
Name
(RefSeq) WD40 repeat-containing protein SMU1
  KO
K13111  WD40 repeat-containing protein SMU1
Organism
onl  Oreochromis niloticus (Nile tilapia)
Brite
KEGG Orthology (KO) [BR:onl00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:onl03041]
    100707927
Spliceosome [BR:onl03041]
 Complex B
  Other components
   Complex B specific factors
    100707927
SSDB
Motif
Pfam: WD40 WD40_WDHD1_1st WD40_Prp19 Beta-prop_EML_2 WDR55 WD40_CDC20-Fz Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_EML EIF3I ANAPC4_WD40 Beta-prop_CAF1B_HIR1 WDR90_beta-prop_4th Beta-prop_WDR90_POC16_2nd Beta-prop_WDR75_1st LisH_TPL WD40_MABP1-WDR62_1st NBCH_WD40 Beta-prop_TEP1_C Beta-prop_Nup120_160 Beta-prop_RIG_2nd Beta-prop_HPS5 Beta-prop_NWD2_C Beta-prop_IFT122_1st Ge1_WD40 Beta-prop_IFT140_1st Beta-prop_Vps41 Beta-prop_NUP159_NUP214 Beta-prop_DCAF4 Beta-prop_SCAP Beta-prop_WDR19_1st Beta-prop_SPT8 Beta-prop_WDR35_TULP_N Beta-prop_EIPR1 WD40_RFWD3 Beta-prop_WDR75_2nd Beta-prop_VPS8 Beta-prop_IP5PC_F PEP5_VPS11_N VPS8_N TFIIIC_delta Beta-prop_WDR11_2nd Mala_s_1-like Beta-prop_RSE1_1st Beta-prop_LRRK2 DUF7165
Other DBs
NCBI-GeneID: 100707927
NCBI-ProteinID: XP_005458773
Ensembl: ENSONIG00000014535
UniProt: A0A669E5X9
LinkDB
Position
LG6:19456977..19470318
AA seq 522 aa
MQQQQGDNISISMAVEMEPADVIRLIMQYLKENNLYRTLTTLQEETTVSLNTVESIESFI
ADINKGHWDSVLLAIESLKLPDNILIDLYEQVVMELIEMREVGAARSLLRQTDPMIMLKQ
TQPERYGHLENLLTCSYFDPREAYPKGSSKEKRRRAIAEALVREVSVVPPSRLIGLLEQV
SSMKLQQYTDHLSPDMTIDTSASKEKYVEKETFPNQLYRHIKFGRRSHVECARFSPDGKY
LITGSVDGFIEVWNFNSGKISKDLKYQAQDSFMMMDDAVLCMCFSQDTDLLATGAQNGKI
KVWKIQSGLCMRRFEHAHNKGVACLGFSKDGNQILSASFDHTIRVHELRSGKTLKELNGH
SSFVNDAFFTQDGFHIISASSDGTVKIWNTKSCECIHTFKCLSRTPDVPVNNVIPLPQNP
EHFVVCNHSNAVVVMSMHGQTVKTFSSDRKGADFVCCTLSPRGEWIYCVGEDLVLYCFSY
TTGRLEKTLTVHEKDVIGITHHPHENLIATYSEDGLLRLWKP
NT seq 1569 nt   +upstreamnt  +downstreamnt
atgcagcagcagcagggagacaacatcagcatcagcatggctgtggagatggagcccgcg
gatgtgatccgcctgataatgcagtacctcaaggagaacaacctctaccggacgctgacc
acattacaagaggaaaccaccgtctccctcaacacagtggagagcattgaaagctttatt
gcagatataaacaagggccactgggactctgtcctgctggctattgaatctctcaagttg
cctgacaacatacttattgacctttatgagcaggttgttatggagctcattgaaatgagg
gaggtgggcgcagctcgctcactcctcaggcaaactgacccgatgatcatgttgaagcag
acccagccagaaaggtacggccacctggagaacctgctaacctgctcctactttgaccct
cgtgaggcgtacccaaaaggaagcagcaaggagaagcggcgcagagccatagctgaggct
ctggtgagggaggtcagcgtggtgcccccctcccgcctcataggactcctggaacaagtc
agttctatgaaactacagcagtatacagatcacctctcccctgatatgaccattgataca
tctgccagcaaagagaaatatgtggagaaagagacctttccaaaccagctgtaccgccac
atcaagtttgggcggcggtcgcacgtggaatgtgcccgtttctcacccgacggaaagtat
ttaattacgggttcagtagacggctttattgaggtctggaacttcaacagtggaaaaatt
agcaaggatttaaagtatcaggcccaagacagcttcatgatgatggatgatgctgtgctg
tgtatgtgcttcagtcaggatacagatctactggctactggagctcagaatggcaaaata
aaggtgtggaagatccagagcggcttgtgtatgcgtaggtttgagcatgctcacaacaaa
ggcgtggcttgtttgggcttttccaaagacggcaaccagatcctcagtgcctccttcgac
cacaccatcagagtccacgagctgaggtcaggcaagacgctaaaggagttaaatggccat
tcatcattcgtaaacgatgcgttcttcactcaagatggatttcacatcatcagcgcctca
tcagatggcactgtgaagatttggaacacaaaatcctgtgagtgcatccacacttttaaa
tgtctgtcgaggacaccggatgtccccgtcaacaacgtgatccctctcccccaaaatcca
gagcactttgtggtttgtaaccactccaacgccgtggtcgtcatgagcatgcatggccag
actgtgaagaccttcagctcagacaggaaaggagcagactttgtgtgttgcaccctgtca
ccccgcggggagtggatttactgtgtgggggaggacttagtgctctactgcttcagctat
acaacaggaaggctggagaaaacgctgactgttcacgagaaagatgtaattggcatcact
caccacccacatgagaatctgattgccacgtacagtgaagacggtctgctgaggctatgg
aagccttaa

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