Oreochromis niloticus (Nile tilapia): 100708044
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Entry
100708044 CDS
T06104
Name
(RefSeq) structure-specific endonuclease subunit slx1
KO
K15078
structure-specific endonuclease subunit SLX1 [EC:3.6.1.-]
Organism
onl
Oreochromis niloticus (Nile tilapia)
Pathway
onl03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
onl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
100708044
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
onl03400
]
100708044
DNA repair and recombination proteins [BR:
onl03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
100708044
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SLX1_C
GIY-YIG
zf-HC5HC2H
zf-RING-like
FANCL_C
zf-HC5HC2H_2
PHD_NSD
T5orf172
Motif
Other DBs
NCBI-GeneID:
100708044
NCBI-ProteinID:
XP_005465437
Ensembl:
ENSONIG00000015715
UniProt:
I3KF83
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All DBs
Position
LG3:3557622..3563193
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AA seq
263 aa
AA seq
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MVVEVESFFGVYMLYCINPKFKGRIYIGFTVNPERRIGQHNAGRHRGGAKRTSGRGPWEM
VLIIHGFPSDIAALRFEWAWQHPHSSRRLTHVSRRSRKESSLEFHWRVVSNMLRVAPWNR
LPLTARWLKQEYRMDFEPGLQPPLHIPITFGTVRAKKTPLLQCQDEEEEEASRCFLCEKH
VKASEELSCIHPSCRMRSHVICLARYFLRSESSHLLPIEGECPSCDSSMLWGSLIRHKHG
CFGDLEEVTLSAPQSHWADELQI
NT seq
792 nt
NT seq
+upstream
nt +downstream
nt
atggtagtggaggtggaaagtttcttcggggtgtatatgctgtactgcatcaatccaaag
tttaagggccgtatctacatcggcttcactgtgaacccagagcgaaggataggacagcac
aatgctgggaggcacagaggaggggccaagaggaccagcgggagaggaccgtgggagatg
gtcctcattatccacggcttcccatctgatattgctgctctcaggtttgagtgggcgtgg
cagcatcctcattcctccaggaggcttacgcatgtatctcgacgctccagaaaagaatcg
agcctggaattccactggcgagtcgtctccaacatgctgagggtggcgccatggaacaga
ctgccgctaacagcccgctggctcaaacaggagtacaggatggactttgagcctggcctg
cagcctcccctccatatccccatcacttttggcaccgtaagagccaaaaagacacccttg
ctacagtgtcaggacgaggaagaggaggaggcatccaggtgttttctctgtgagaagcat
gtcaaggcgtcagaggagctgagctgtatccacccttcctgccggatgagaagtcatgta
atctgccttgccagatatttcctgaggtctgagtcatcccaccttctgccaattgaggga
gagtgtccttcctgcgacagctcgatgctgtggggaagtctcatccgacataaacacggc
tgcttcggagacctggaggaggtcacgctgtctgcaccccaaagtcactgggcagacgaa
ctgcagatatga
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