Oreochromis niloticus (Nile tilapia): 100708186
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Entry
100708186 CDS
T06104
Symbol
mtrex
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
onl
Oreochromis niloticus (Nile tilapia)
Pathway
onl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
onl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100708186 (mtrex)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
onl03019
]
100708186 (mtrex)
03041 Spliceosome [BR:
onl03041
]
100708186 (mtrex)
03009 Ribosome biogenesis [BR:
onl03009
]
100708186 (mtrex)
03016 Transfer RNA biogenesis [BR:
onl03016
]
100708186 (mtrex)
Enzymes [BR:
onl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
100708186 (mtrex)
Messenger RNA biogenesis [BR:
onl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
100708186 (mtrex)
Spliceosome [BR:
onl03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
100708186 (mtrex)
Complex C
U4/U6.U5 tri-SnRNP related factors
100708186 (mtrex)
Ribosome biogenesis [BR:
onl03009
]
Eukaryotic type
Pre-60S particles
Helicases
100708186 (mtrex)
Transfer RNA biogenesis [BR:
onl03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
100708186 (mtrex)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
100708186
NCBI-ProteinID:
XP_003451526
Ensembl:
ENSONIG00000007587
UniProt:
I3JL22
LinkDB
All DBs
Position
LG7:17188634..17204962
Genome browser
AA seq
1037 aa
AA seq
DB search
MADPFGDGLFSVFDDEQQNTTNKKVPASVAAEPGKAAAKNETDRDVGPSARAKREADSDG
GEEVVFVKKPRHEAVSANELNLAEFMPQVKVEQVETVEGCSHEVALPASEEYKPLKPRVG
KAAKEYPFVLDPFQREAILCIDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSP
IKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEIMREVAWVV
FDEIHYMRDTERGVVWEETIILLPDNVHYVFLSATIPNAKQFAEWICHLHKQPCHVVYTD
YRPTPLQHYIFPAGGDGLHLVVDENGEFREDNFNTAMQVLRDAGDSGGSSGGAKWDPKGR
RGGTKGPSSVFKIVKMIMERNFQPVIIFSFSKKECEAYALQVAKLDFNRDDEKRLVEEVF
NNAVDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLLKALFATET
FAMGINMPARTVLFTSARKFDGKNHRFITSGEYIQMSGRAGRRGMDDRGIVIFMVDEKMS
PAVGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRALPGVVEK
IKKLEEQYHTIEIPNEESVVTYFKIRQQLAKLGKEIQEFIHKPKYCLPFLQPGRLVKVKN
EDADFGWGVVVNFCKKSNVKTTTDSEPLYVVEVLVHCSKDSVKDAATEAAKPAAPGETGE
MQVVPVMLHLLTSVSSVRLYIPKDLRPYDNRQLMLKSIQEVQKRFPDGVPVLDPIDDMGI
KDPALKKVIQKIEAFEHRMYTHPLHSDPNLESVYSLCEKKALIAADVRTAKRDLKKARTI
LQMDQLKCRKRVLRRLGFASPSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLTVEQA
TALLSCFVFQENASEMPKLTEQLAAPLRQMQECAKRIAKVSADAKLEVDEESYLNQFKPH
LMDVVYAWANGATFAQICKMTDVFEGSIIRCMRRLEEVLRQMCSASKAIGNTELENKFAE
GITKIKRDIVFAASLYL
NT seq
3114 nt
NT seq
+upstream
nt +downstream
nt
atggctgacccctttggagacggtttgttcagcgtgtttgacgatgaacaacaaaatacc
acaaataaaaaagtaccggcgagtgtggcggcagaaccggggaaagctgcagccaaaaat
gaaacagacagagatgtcggtccgtctgcccgagccaagagagaggcagacagtgatggt
ggagaggaggtggtgtttgtgaagaaacctcgacatgaggcagtttcggcgaatgaacta
aatcttgcagaatttatgcctcaggtgaaagtggagcaggtggaaacagtggaaggatgt
tcacatgaggttgctcttcccgccagtgaggaatataaacctctgaaaccacgagtggga
aaagcagccaaggagtaccctttcgttctcgatcccttccagcgggaggccatattatgt
attgacaacaaccagtctgtgcttgtgtctgcacacacctctgcagggaagactgtttgt
gctgaatacgccattgcgctggctctcagggagaagcagagagtgatcttcaccagcccc
atcaaggctctctccaaccagaagtacagagagatgtacgaagagtttcaagatgtagga
ctgatgacaggtgacgtcaccatcaaccccactgcctcttgcctcgtcatgacaacagag
attctgaggagcatgctgtaccgaggctccgagatcatgagggaagtggcgtgggtcgtc
ttcgatgagatccattacatgagagacacggagcgtggcgtggtttgggaggagaccatc
attcttcttcccgataatgtgcattatgttttcctgtcagccaccatccccaatgccaaa
cagtttgccgagtggatttgtcacttacacaagcagccatgccatgtggtctacacagac
taccgccccactccactgcaacactatatctttccagcagggggtgatggactccacctg
gttgttgatgaaaatggagaattcagagaggacaatttcaacacagctatgcaggtgctg
agagatgctggggattctgggggcagcagcggaggtgccaagtgggatccaaaaggaagg
agaggaggcactaaaggcccatcgagcgtgttcaagatagtgaagatgatcatggagagg
aacttccagccagtgattattttcagcttcagtaagaaagagtgtgaggcctacgctcta
caggtggctaaactggactttaacagagatgatgagaaacgtctggtggaggaggttttc
aacaatgcagtggactgtctatcagatgaggacaagaaactgcctcaggtcgagcacgtg
ctgccactgttaaagagggggatagggatccatcatggaggcctactgcccatcctgaaa
gagaccatagagatccttttctctgaagggctcctcaaggccttgtttgccacagagacg
ttcgccatgggcatcaacatgccagctcgcactgtgctcttcaccagtgcacgcaagttt
gatggcaagaatcaccgctttataacatcaggtgagtatatccagatgtctgggcgtgct
gggaggagaggaatggacgacagagggattgttattttcatggtggatgagaagatgagc
ccagctgtgggtaaacagctactcaagggctctgcagatcctttgaacagtgccttccac
ttaacctacaacatggtgctcaacctgctgcgtgtggaggagatcaacccagagtacatg
ctagagaagtctttctaccagttccaacactacagggctttgcctggtgtagtggagaaa
attaagaagttggaggagcagtaccacaccattgagattcccaatgaagagagtgtggtc
acttactttaaaatcagacagcagctggccaaactgggtaaagaaatccaggagttcatc
cataaacccaaatactgcttgcccttcttacagcctgggcgacttgtcaaggtaaaaaat
gaagatgctgactttggctggggagtggttgtaaacttttgcaagaagtctaatgttaag
acgactacagactcagagccgctgtatgtcgtggaggttttggtccactgtagtaaggac
agtgtgaaagacgctgcaactgaagctgctaaacctgccgctccaggggagactggagag
atgcaggtggttccagtgatgctccatctcctcacttctgtcagctcagttcgtctttac
atccccaaagacctgaggccctatgacaacagacagctcatgctcaagtccatacaggag
gtgcagaaacgtttcccagatggcgttcctgtgcttgaccccatagatgacatgggcatc
aaagaccctgcattaaagaaagttattcagaagattgaggcctttgagcaccgcatgtac
acccatcccctgcacagtgaccccaacttggaatctgtctattctctctgtgagaagaaa
gctctgatcgcagcagatgttcgaacagccaagcgagacctcaaaaaagctcgaaccatc
ttgcagatggaccagctgaagtgcagaaagagagttcttcgaagactcggctttgccagt
ccctctgatgtcattgagatgaaagggcgggtcgcctgtgaaattagcagtgccgacgag
ctcctgctgactgagatgatgttcaacggtctcttcaatgatctgacagttgagcaagcc
accgccctgctgtcctgctttgtcttccaggaaaacgccagcgagatgccaaaactaact
gaacagctcgctgcaccgctgagacagatgcaggaatgtgcaaagcgcatcgccaaagtg
tcagcggacgccaagctggaggtggacgaagagagctatctgaaccaatttaaaccccac
ctaatggacgtggtttatgcctgggccaacggggccacgtttgctcaaatctgcaaaatg
accgacgtctttgaagggagcatcatccgctgcatgcgtcgtctggaggaggtcctgaga
cagatgtgctctgcatctaaagccatcggcaacacagagctggagaataagtttgctgaa
ggaataacaaagatcaagagagacatcgtctttgctgccagtctctacttatag
DBGET
integrated database retrieval system
