Oreochromis niloticus (Nile tilapia): 100708206
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Entry
100708206 CDS
T06104
Name
(RefSeq) ATP-dependent RNA helicase DDX3X isoform X3
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
onl
Oreochromis niloticus (Nile tilapia)
Pathway
onl04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
onl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
onl03019
]
100708206
03041 Spliceosome [BR:
onl03041
]
100708206
03036 Chromosome and associated proteins [BR:
onl03036
]
100708206
Enzymes [BR:
onl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
100708206
Messenger RNA biogenesis [BR:
onl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
100708206
mRNA cycle factors
Common to processing body (P body) and stress granule
100708206
Spliceosome [BR:
onl03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
100708206
Chromosome and associated proteins [BR:
onl03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
100708206
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
100708206
NCBI-ProteinID:
XP_013119969
Ensembl:
ENSONIG00000015293
LinkDB
All DBs
Position
LG23:13538308..13557669
Genome browser
AA seq
723 aa
AA seq
DB search
MSHVAVENAHGLEQQLAVLDLSAADGQGGGSSRRYIPPHLRNKDASKNAGNAFAAGRQGG
YTIAPAANYGWDGTRNNFVNGYHDNRMTGNSFNRGPPRMERGRGGVGGGYRNNRGGAFNP
MNPAQPMSFAGYENKDAGGWNTAKDTYSSFGNNRGKSAFFNDRGNATRGRFEHGGFGNGG
GGGNSRWVEESRDDGDWSKPTPRNERLEHELFSGSNTGINFEKYDDIPVEATGQNCPQHI
ESFQDVDMGEIIMGNIALSRYTRPTPVQKYAIPIIKSKRDLMACAQTGSGKTAAFLLPVL
SQIYTDGPGEALNAAKASGQENGKYGRRKQYPISLVLAPTRELALQIYDEARKFSYRSRV
RPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDYCNYLVLDEADRMLDM
GFEPQIRRIVEQDTMPPKGIRQTMMFSATFPKEIQILARDFLEDYIFLAVGRVGSTSENI
TQKVVWVEESDKRSFLLDLLSATGKDSLTLVFVETKKGADALEDFLYREGYACTSIHGDR
SQRDREEALNQFRSGKCPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRV
GNLGLATSFFNDKNGNITKDLLDILVEAKQEVPSWLESLAYEHQHKSSNRGRSKRFSGGF
GARDYRQTAAGLNAGGFGGRGGGRNQAGHGGNRGFGGGGFSNFYTSDGYGGNYSHSQVDW
WGN
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atgagtcatgtggccgtcgaaaatgcccacggtctagaacagcagctcgctgtcctagac
ttgagcgctgcagacggacaaggtggcggcagtagcaggcgatacatacctccacattta
aggaacaaagatgcttccaaaaatgcaggaaatgcctttgctgctgggcgacagggtggt
tacaccatcgcgcctgcagccaactacggctgggacggcacacgcaacaactttgtcaac
ggctaccacgacaatcgcatgacggggaactcatttaaccgtggcccgcctcgcatggag
cggggaagaggtggcgttggaggtggttaccgcaacaacaggggtggagccttcaacccc
atgaacccagcacagccaatgagctttgctgggtatgaaaataaagacgcaggtggctgg
aacactgccaaggacacctatagcagttttggcaataaccgtggaaagtctgctttcttc
aatgacagaggcaacgctacccgaggaaggtttgagcatggaggctttggtaatggagga
gggggaggaaacagccgctgggtggaggaatccagagatgacggagactggtccaagcca
acccctcgcaacgaacgtcttgaacatgaattgttctctggcagtaacactgggattaac
tttgagaaatacgatgacattcctgttgaggccacgggacagaactgccctcagcacatc
gagagtttccaagacgtggacatgggtgagattatcatgggtaacattgctctgagccgc
tacaccagacccactcctgtccagaaatacgccattcctattattaaatcaaagagagac
ctcatggcctgcgcacagacaggttctgggaaaacagcagcattcctcttgccagtcctc
agccagatttacactgatggaccaggagaggcccttaacgcagctaaagcatcaggacag
gagaatggaaagtatggccgtcgcaagcagtaccccatctccctggtgctggctcccacc
agagaactggcactgcagatatatgatgaagcaaggaagttttcctaccgctccagagtg
cgtccctgtgttgtgtatggaggagcagacattggccagcagatcagagacctggagaga
ggctgtcacctgctggtggccactccaggaagactcgtggacatgatggagagaggcaag
atcggactggactactgcaactacctggtcctagatgaggccgaccgtatgctggacatg
ggctttgaaccacagatacggcgcatcgtcgaacaggacaccatgcctcctaaaggcatc
cgacaaactatgatgttcagcgctacgtttcccaaagaaatccagatcctagctcgggat
ttcctggaggattacatcttcctggcagtgggcagagtgggttccacctcggagaacatc
actcagaaagtggtgtgggtggaagagagcgataagaggtctttcctcttggacctgcta
agcgctacaggtaaggactcgttgactctggtttttgtggagaccaagaaaggcgcagac
gccttggaggacttcctatatcgggaaggctacgcctgcaccagtatccatggtgaccgt
tcccagagagatcgagaggaggccctgaaccagttcagatcgggaaaatgtcccatcctg
gttgctacagcggtagcagctcggggtttggacatctccaacgtgaaacatgttattaac
tttgacctgccaagcgacatagaggagtacgtccaccgcattggacgtacgggacgagta
ggaaacctggggctggcaacatcgttcttcaatgacaaaaacgggaacatcactaaagac
ctgctggacatcctagtagaggccaaacaggaagttccctcatggctcgagagcctggcc
tatgaacaccagcacaagagtagtaatagagggcgctctaagaggttctctggcgggttt
ggagcacgagattatcgtcagactgctgcaggactcaacgccggagggtttggaggacgt
ggaggaggacgcaaccaggcaggacatggaggaaaccgtggctttggaggaggcggcttc
agcaacttctacaccagcgatggctacggaggcaactactcacactctcaagttgactgg
tggggcaactag
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