Oreochromis niloticus (Nile tilapia): 100708537
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Entry
100708537 CDS
T06104
Symbol
lsm8
Name
(RefSeq) LSM8 homolog, U6 small nuclear RNA associated
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
onl
Oreochromis niloticus (Nile tilapia)
Pathway
onl03018
RNA degradation
onl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
onl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100708537 (lsm8)
09123 Folding, sorting and degradation
03018 RNA degradation
100708537 (lsm8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
onl03019
]
100708537 (lsm8)
03041 Spliceosome [BR:
onl03041
]
100708537 (lsm8)
Messenger RNA biogenesis [BR:
onl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
100708537 (lsm8)
mRNA degradation factors
5'-3' decay
Lsm complex
100708537 (lsm8)
Spliceosome [BR:
onl03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
100708537 (lsm8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF150_C
Motif
Other DBs
NCBI-GeneID:
100708537
NCBI-ProteinID:
XP_003448130
LinkDB
All DBs
Position
LG17:20050370..20052562
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AA seq
96 aa
AA seq
DB search
MSTALESYINRTVAIVTSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLY
IVRGDNVAVIGEIDEETDSTLDLGNIRAEPLNSVVH
NT seq
291 nt
NT seq
+upstream
nt +downstream
nt
atgtccactgcgttggagagctacattaaccgtaccgtggccattgtcacctcggacggc
aggatgattgtgggcactctgaagggctttgatcagaccatcaacctgatcctggatgag
agtcatgagcgagtgttcagctccagtcagggggtcgagcaggtggtgctgggactctac
attgtccgaggcgacaatgtagcggtgatcggggagatcgatgaggagacggactccact
ctggatttaggaaacatcagagctgagccgctcaactctgtcgttcactga
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integrated database retrieval system
