| Entry |
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| Symbol |
smarca4
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| Name |
(RefSeq) transcription activator BRG1 isoform X1
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| KO |
| K11647 | SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-] |
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| Organism |
onl Oreochromis niloticus (Nile tilapia)
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| Pathway |
| onl03082 | ATP-dependent chromatin remodeling |
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| Brite |
KEGG Orthology (KO) [BR:onl00001]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
100708694 (smarca4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:onl03021]
100708694 (smarca4)
03036 Chromosome and associated proteins [BR:onl03036]
100708694 (smarca4)
Transcription machinery [BR:onl03021]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
100708694 (smarca4)
Chromosome and associated proteins [BR:onl03036]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
100708694 (smarca4)
Chromatin remodeling factors
BAF complex
100708694 (smarca4)
PBAF complex
100708694 (smarca4)
GBAF(ncBAF) complex
100708694 (smarca4)
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
LG4:8397295..8413470
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| AA seq |
1641 aa
MSTPDPPMGGTPRPGPSPGPGPSPGGMMGPSPGPSPGSAHSMMGPSPGPPGSGHPHPPQG
PSGYPQDNMHQMHKPMEAMHEKGMPDDPRYGQMKGLGMRPGGHSGMGPPPSPMDQHSQGY
PSPLGGSEHAPSPVPANGPPSGPMMPGGPPGPGAGPMEGSGDSNQGMGQPNRGGPQGPGG
PPVVAGGAGGPTPFNQNQLHQLRAQIMAYKMLARSQPLPEHLQMAVQGKRPMPGMQQQPM
PNMPPSTGPGGGPGAGPGPAPANYNRQHGMVGPNIAPPGPAGVPPGMQGQPTNGPPKSWP
EGPMVNAAAPSNPPQKLIPPQPTGRPSPAPPSVPPAASPVMPPQTQSPGQPAQPPPMMLH
QKQNRITPIQKPRGLDPVEILQEREYRLQARISHRIQELENLPGSLAGDLRTKATIELKA
LRLLNFQRQLRQEVVVCMRRDTALETALNAKAYKRSKRQSLREARITEKLEKQQKIEQER
KRRQKHQEYLNSILQHAKDFKEYHRSITAKIQKATKAVATYHANTEREQKKENERIEKER
MRRLMAEDEEGYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRAHKAAQALKEKKKKKKK
KKKPEAPEGAAPALGPDGEPLDETSQMSDLPVKVIHVDSGKILTGVEAPKAGQLEAWLEM
NPGYEVAPRSDSEGSGSEEEEEEEEEDDAQPQTSSAATEEKKKIPDPDSEDVSEVDVLHI
IEHAKQDVDDEYGNASFNRGLQSYYAVAHAVTEKVDKQSSLLVNGQLKQYQIKGLEWLVS
LYNNNLNGILADEMGLGKTIQTIALITYLMEYKRINGPFLIIVPLSTLSNWVYEFDKWAP
SVVKVSYKGSPAARRSFVPILRSGKFNVLLTTYEYIIKDKQVLAKIRWKYMIVDEGHRMK
NHHCKLTQVLNTHYLAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPF
AMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVL
YRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPFMFQHIEESFSEHLGYSG
GIITGPDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRNFKYLRLD
GTTKAEDRGMLLKTFNDPASEYFVFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQ
DRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSGYERRAFL
QAILEHEEQDEVGARGGCRTRGAWEEDEVPDDETVNQMIARSEEEFEQFMRMDLDRRREE
ARNPKRKPRLMEEDDLPGWILKDDAEVERLTCEEEEEKMFGRGSRQRKEVDYSDSLTEKQ
WLKAIEEGNLEDIEEEVRHKKTTRKRKRDRDHDGGPATPSSSSGRGRDKDEDGKKAKKRG
RPPAEKLSPNPPSLTKKMKKIVDAVIKYKDGNGRQLSEVFIQLPSRKELPEYYELIRKPV
DFRKIKERIRSHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIE
KEDESEGEESEEEEEEVDEGSESECRSVKVKIKLGRKEKGERGGKGQRRRGRGARAKPVV
SDDDSEEEQEEERSASGSEED |
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| NT seq |
4926 nt +upstreamnt +downstreamnt
atgtccactcctgacccccctatgggagggacacctcgccctggtccctccccaggccca
gggccatctccaggaggcatgatggggccaagtccaggtccctcaccaggctcggcccac
agcatgatggggcctagcccaggacctccaggatctggacacccccatcctccacaggga
ccctcaggatatcctcaggacaacatgcaccagatgcataaaccaatggaagccatgcat
gagaagggaatgcccgacgaccctcgctatggccagatgaagggcttgggcatgagacca
gggggacacagtgggatgggaccccctccgagcccaatggaccaacattcccaaggttac
ccctctccattaggaggctcggagcacgcacctagtcccgtcccagccaacggccctcct
tctggtcccatgatgcctggaggcccacctggcccgggagcaggccctatggagggcagt
ggagactcaaatcagggtatgggtcaaccgaatcgtggtggtccccaagggccagggggg
ccccctgttgtagcgggtggtgcaggtggacccactcccttcaaccagaaccagctacac
caactcagggcacagattatggcctacaagatgctggcacgcagtcagcctctaccagag
cacctgcagatggctgtgcagggaaagaggcccatgccagggatgcagcaacagccaatg
cctaatatgccaccttctacagggcctggaggtggcccgggtgctgggccgggaccagct
ccagcaaattacaatagacaacatggcatggtaggtcccaatatagctcctcctggacct
gcaggagttcctccaggtatgcaaggccagcctactaatggacctcccaaatcatggcct
gaaggaccaatggtgaacgctgctgccccttccaaccctccccagaagttaattccaccc
caacccacaggccgaccttctcctgctcctccctcagtgcctccagcagcctcccctgtt
atgccccctcagacacagtcgccaggacagcctgcacagccccctcccatgatgctacac
cagaagcagaatcgcataacccccatccaaaaacctcgtgggctcgatccggtggagatc
ctccaggagagagagtacaggcttcaggctcgtatttctcaccgtatacaggagctggag
aacctgcctggctctctagctggtgatctacgcaccaaagccaccatcgagctcaaggcc
ctcaggctgcttaacttccagagacagctgcgccaggaggttgttgtttgcatgcgtcgt
gacactgctttggaaactgcccttaatgctaaggcctacaaacgcagcaaacggcagtct
ctacgtgaggctcgtatcactgagaagctggagaaacagcagaagattgaacaagagcgc
aaacggcgccagaaacaccaggaatacctcaacagcatcctgcagcatgccaaggacttt
aaggagtatcaccgctccatcacagcaaagatccagaaggccaccaaagctgtcgccacc
tatcatgccaacactgagcgcgagcagaagaaagagaatgaacgcattgagaaggagaga
atgcggaggctgatggctgaagatgaagaaggttatcgtaaacttatcgaccagaagaaa
gacaagcgtctggcgtacctgctacagcagacagacgagtacgtggccaacctcactgag
ttggtgcgcgcacacaaggctgcacaagcactcaaagagaagaaaaagaagaagaagaaa
aagaagaagcccgaggctccggagggagctgctcctgctctgggacctgacggagagcct
ttagatgagactagtcaaatgagtgacctaccagtcaaggtcatccatgtagacagtgga
aagatcctgaccggtgtggaagcacccaaggctgggcagctggaagcctggcttgaaatg
aacccaggatacgaagtagcgccacgctccgacagtgaaggcagcggttcagaggaggaa
gaggaggaggaggaggaggacgacgcccagcctcagacgtcttcagctgcaacagaagag
aagaagaagatccccgaccccgacagtgaagatgtatcagaagtggatgtcctgcacatc
atcgaacacgccaagcaggatgtagacgacgagtacggcaatgcaagtttcaaccgcggc
ctgcagtcctactatgcagtggctcatgctgtcactgagaaagtggataaacagtcctca
ctgctggtcaatgggcagctcaagcaataccagatcaaaggtctggagtggctggtgtca
ctttacaacaacaacttgaatggcatcctggctgatgagatgggtctaggcaaaacgatc
cagaccatcgccctcatcacttacctcatggagtacaagcgcatcaatgggcccttcctc
atcatcgtacctctctcaactttatcaaactgggtgtatgagtttgataagtgggcaccg
tctgttgtgaaggtttcctacaaggggtctccagctgctcgacgttcattcgttccaatt
ttacgtagcggaaagttcaacgtgctgctgaccacatatgagtacattattaaggataag
caggtgttagcaaagatccgctggaagtacatgattgtggatgaaggccatcgtatgaag
aaccatcactgtaagctgacccaagtcttgaacacacactacttggcgccacgacgtttg
ctgctcacaggaactccgctgcagaacaagctccccgagctctgggccctgctcaatttc
ctgctgcccacgatcttcaagagctgcagcaccttcgaacagtggttcaacgccccgttc
gccatgactggagagaaggttgacctaaatgaagaagagaccatcctgatcattcgacgt
ttacacaaggtgctccgacctttcttgctgcggcgactcaagaaagaagtcgaggcgcag
ctgccagagaaggtggagtatgtcataaagtgcgacatgtcagctctgcagagggttctg
tacagacacatgcaggccaagggagtcttgctcacagacggttcagaaaaagacaagaag
ggtaaaggtggcacgaagaccctgatgaacactatcatgcagctgaggaagatttgcaat
caccccttcatgttccagcacattgaggagtccttctcggagcatctcggttattctggt
ggaatcatcacaggccctgacctgtatcgtgcctctggaaagtttgagctgctggatcgt
atcctgcccaagctgagggccaccaaccacaaagtgctgctcttctgtcaaatgacctca
ctcatgaccatcatggaggactattttgcgtaccgcaatttcaagtacctgcgtctggat
ggtaccaccaaagcagaggatcgtggcatgctgctgaagacgttcaacgaccccgcctct
gagtactttgtgttcttgctcagcaccagggctggaggtctgggcctgaacctgcaatct
gctgatactgtcatcatttttgacagtgactggaacccgcaccaggacttgcaggcccag
gatagagcccaccgtatcggtcagcaaaacgaggtgcgcgtgctgcgcctctgcaccgtc
aacagcgtggaggaaaagatcctggcagcagccaagtacaagctgaacgtggaccagaag
gtcatccaggccggcatgttcgaccagaagtcttcaggctatgaacgtcgggccttctta
caggctattctggagcacgaggagcaggacgaggtcggggctcgaggaggctgccgcact
aggggggcgtgggaggaagacgaagtgcctgatgatgagaccgtcaatcagatgatcgcc
aggagcgaagaggagtttgaacagttcatgcgtatggatctagacagacgccgcgaggag
gcccgtaaccctaagaggaaaccccgtctgatggaggaggacgacctgcccggctggatt
ttgaaagacgacgctgaggttgagaggctaacctgcgaggaggaggaggagaagatgttt
ggcagagggtctcgccagcgcaaggaggtggactacagcgactcgctcacagagaagcag
tggctcaaggccatagaagaaggcaatctagaggacattgaagaggaagtgcgtcacaag
aagacgaccagaaagcgcaagagagaccgtgaccacgacggcggcccggccacacccagc
tccagcagcggccgcgggcgggacaaggacgaggatggaaagaaagcaaagaaacggggt
cgcccacctgctgagaagctctctccgaaccctccatctctcactaagaagatgaagaag
attgttgatgctgtcatcaaatacaaggacggcaatggccgacaactgagcgaagtcttc
atccagctcccctctcgcaaagagctgcctgagtattacgagctcatccgcaaaccggtg
gacttcagaaagatcaaggagcggatccgcagccacaaataccgcagcctgaacgacctg
gagaaggatgtgatgctgctgtgtcagaacgcacagactttcaacctggagggctctttg
atctacgaggactccattgtgctccagtccgtcttcaccagcgtgagacagaagatcgag
aaggaggatgaaagcgagggagaagaaagcgaggaggaagaggaggaggtagatgaaggc
tcggagtctgaatgtcgttcagtgaaggtgaagattaaactgggccggaaagagaagggg
gagagaggagggaaaggacaacggcggcggggccgcggagcccgggctaaacctgtggta
agcgacgacgacagcgaggaggaacaggaagaggagcgttcagccagtggcagcgaggaa
gactga |
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