Oreochromis niloticus (Nile tilapia): 100708811
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Entry
100708811 CDS
T06104
Symbol
utp4
Name
(RefSeq) U3 small nucleolar RNA-associated protein 4 homolog
KO
K14548
U3 small nucleolar RNA-associated protein 4
Organism
onl
Oreochromis niloticus (Nile tilapia)
Pathway
onl03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
onl00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
100708811 (utp4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
onl03009
]
100708811 (utp4)
Ribosome biogenesis [BR:
onl03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
100708811 (utp4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_WDR5
Beta-prop_EML_2
WD40
WDR55
WD40_Prp19
Beta-prop_RIG_2nd
Beta-prop_WDR3_2nd
Beta-prop_WDR36-Utp21_2nd
ANAPC4_WD40
Beta-prop_Aladin
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_HPS5
Beta-prop_EML
Beta-prop_CAF1B_HIR1
Beta-prop_NUP159_NUP214
WD40_MABP1-WDR62_2nd
DUF7165
Beta-prop_TEP1_2nd
Beta-prop_Vps41
Beta-prop_SCAP
EIF3I
RMC1_N
Beta-prop_WDR19_1st
PROPPIN
Beta-prop_IFT140_1st
WD40_Gbeta
Ge1_WD40
Beta-prop_WDR35_TULP_N
CPSF_A
Beta-prop_ACSF4
Beta-prop_KIB1-4
Motif
Other DBs
NCBI-GeneID:
100708811
NCBI-ProteinID:
XP_003449295
Ensembl:
ENSONIG00000004191
LinkDB
All DBs
Position
LG7:38893558..38907137
Genome browser
AA seq
684 aa
AA seq
DB search
MGEFKVHRVRFFDYMPSAIRTMAFNSQTERLAVARADGAVEIFNFNDNFFQEKVIPGQDG
RAIEALCWVGHRLFSAGLNGEITEYDLENLRPQYTVDAYGGPIWTISSNSQGTQLAVGCE
DGTVKIFAILEERIQFQRNLNRHKGRIISLCWHPSSAQIAAGMTDMITIYDAETGQATRR
LLVDRAMGASKNKEVVVWSVGYLSDHTIISGDSAGKVQIWNGLTGTLVRTYLVTKWDVLV
LSVSKDESSVIAGTSEGTVIQFQFISSTLDQHDKEWVRTRTFRNHSHDVSALAHTDTAVV
SGGMDTQLVVRPLLDKVEKNTQESALRKIAFPHRSLVGCAKKAGLLLFQFPDRLELWKLG
ESEGHGKPGDRLPVKRKPEKLIELKRKGEDHICCSALSACGGWLAYSTVSSVRLYRIQYN
KTISINKVPKLPKELRSVHQLCFSSDSSKLFASSCQSSVIVVAVSQQECRYLHTLKHKTG
SRQPVHLLCASDDGKWLATANTDCEIHIYNLHKMKLHCMVPVYNSCPTTIAIHPVTNNLI
SVHADQQIFEFSLVQKEYTQWSRRLQTQGLLSLWLERDTPITHITFNPKNPDHIILHDTY
MFCIIDQSLPFPELNAVLWNQMTLKNLPVSQRIGQSHAFKICKIFQHLMCVSLLEDLSLV
VVERPLLDIMSQLPAPVRQKKFAT
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atgggcgagtttaaagtacaccgagtccgcttcttcgactacatgccaagtgctatccgg
accatggcattcaacagtcaaactgagcggctggctgtggcccgggctgatggcgcagta
gaaatcttcaacttcaatgacaatttcttccaagaaaaggtgatcccaggacaggatggc
cgagctattgaggctctgtgttgggtgggccatcgactgttcagtgctggtttgaatgga
gagatcacagagtatgacctggagaacctgaggccccagtatactgtagatgcatatgga
ggaccaatctggaccatcagcagcaacagccagggaacacagctggcagttggttgtgag
gacgggactgtaaagatatttgcaatattggaggagaggattcagtttcaaagaaacctc
aacagacataaaggacgcatcatatctttgtgctggcatccatcgagtgcacagattgct
gctggaatgactgacatgatcacaatctatgatgcagagacagggcaggctacacgcaga
ctgctggtggacagggctatgggagcatccaagaataaagaagtggttgtttggagcgtt
ggttatctgtccgaccacaccatcatcagtggggattctgcaggaaaggtccagatctgg
aacggactcacaggaactctggttagaacttacctggtcaccaagtgggatgttctggtt
ctgtctgtttcgaaggatgagagcagtgtcatagctggaacatccgagggcactgtcatc
cagttccagttcatctcctcaactctggaccagcatgataaagagtgggtccgaaccagg
acctttcgaaaccactcccatgatgtcagtgcacttgctcacacagacaccgcagtggtt
tctggaggtatggacacccagttggtggtgcgcccattgctggataaggtggagaagaac
actcaagagtcagcactgcgcaaaatagcgttcccacataggagcctggttggctgtgca
aagaaagctggactccttctcttccagttccctgatcgcttagagctgtggaaacttgga
gaaagtgaaggacatggaaaacctggtgaccgtctacctgtgaagaggaaaccagagaag
ctgatcgagctgaagaggaagggagaggatcacatctgctgtagtgctttgtctgcatgt
ggaggctggttggcatattccactgtttccagtgttcgtctctacagaatacagtataac
aagaccatcagcattaacaaggtgcccaaactgcctaaagagcttcgctcggtccaccag
ctctgcttctcctctgactcctccaaactctttgcttcctcctgccaatcttcagttatt
gttgttgctgtcagtcaacaggagtgcagatatcttcatacccttaaacataagacaggt
tccagacagccagtgcacctcctttgtgctagtgatgatggtaaatggcttgctacagca
aacactgactgtgagatccacatctacaacctccacaagatgaagctccactgtatggtt
cctgtgtacaactcctgtccgactacaatcgccatccacccagtgaccaacaatctcatc
tctgtgcatgctgaccagcagatctttgaattctccttggtgcagaaggagtacacacag
tggagtcgaagactgcagacacaaggactgctttccctgtggctggagcgggacacaccc
atcacccacattaccttcaatccaaaaaacccggaccacatcattctgcacgacacatac
atgttctgcatcattgatcagagtctgcccttcccagaattgaatgcagtgctctggaat
caaatgacattaaagaaccttcctgtgtcacagaggattggacaaagccatgcctttaag
atctgtaagattttccagcacctcatgtgtgtcagtctattggaggatctctctctggtg
gtagtggagcgccccctactggacatcatgtctcagctgccagcacctgtccgccagaag
aagtttgcaacctaa
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