Oreochromis niloticus (Nile tilapia): 100708991
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Entry
100708991 CDS
T06104
Name
(RefSeq) collagen alpha-6(VI) chain isoform X1
KO
K06238
collagen type VI alpha
Organism
onl
Oreochromis niloticus (Nile tilapia)
Pathway
onl04510
Focal adhesion
onl04512
ECM-receptor interaction
onl04518
Integrin signaling
onl04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
onl00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
100708991
04518 Integrin signaling
100708991
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
100708991
09142 Cell motility
04820 Cytoskeleton in muscle cells
100708991
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
onl04147
]
100708991
00536 Glycosaminoglycan binding proteins [BR:
onl00536
]
100708991
Exosome [BR:
onl04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
100708991
Glycosaminoglycan binding proteins [BR:
onl00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100708991
Hyaluronan
Extracellular matrix or blood plasma proteins
100708991
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
VWA_2
Collagen
VWA_3
VWA_CoxE
Kunitz_BPTI
vWA_SIBA-E
DUF1194
Ku_N
Motif
Other DBs
NCBI-GeneID:
100708991
NCBI-ProteinID:
XP_019219953
LinkDB
All DBs
Position
LG11:complement(37465355..37539766)
Genome browser
AA seq
2497 aa
AA seq
DB search
MSSPNMTGRTGLLFSLITAALFCGVAAQTVRECENVTVGDIVFLVDGSTSITNKNFQDIR
TFLRNTIQGFEIDPNKVQIGLVQYSDDPYPEFQLMDHRDKNSLLAAVENLTHRGGGTKTG
KAIDFLRTEYFTKEAGSRAERRVPQIAVVITDGASTDDVLEPARRLRQHGVIVFAIGVGK
FNQTQLITIANWPSERFVLTSDSYQKLQDQTNSLLETVCHSLEDQRLALVDRFADIFFLV
DSGIASNQFTLFRNELFRLLNRLEVGASGYRVGLAQYGQDVRVDFRLNTHQTKQQIVAAA
RRFRLRSQTGQPRNLGQALSYAKENFFTVEAGGRADQGIPPYLVVVAGKDSDDPVFWSAE
NLKDEGVIIVGMDAGATRDALDRFASPGYIFDSSRVTLLIDLLTTQRVETVTEDCKTANK
ADIVFIVDESGSIGEENFRLMRDFLRSVISVLETGQSKIRVGIVTYNDVPTAHAYLDMFG
DKEDILKFISFLPYRQGGTKTGAALHFTLENIFTKEKGSRKDVPKVAVVITDGESQDNVK
EPAIALRRAGVTVFAVGIKKANKTELLEMASYPKSKFVFTVDSFVKLKPLKETLQATLCN
TIIQIGVQDKESDAETKKACKEKDQADIFFLMDDSESIKDADFADMLKFIIEFLRTFRIG
PDHVRMGLVKYSDSPSLQFDLTQHSDAKTMEKAVKEIIHEKGGTFTGEALSSMKGHFENA
KTSRGYKVSEYLIVITDGKSEDKVQIPAEELRAQGVIIYAIGVNASNDNELNEIAGDPRR
KFFVHSFDALKTIKNNITREICFLEACKDTQGDIFFLTDSSERISEEGFQKMKNFTKSVI
SKSIIGLDKVHIGVMQYSTNTRLEFDLTTHYSLEGMLNTIDGMMQNKTRTRTGRAITEVS
QYFDAARGGRPWVKQWLVVITDGKSEDSVREPARALRAKGVVIYAIGVNKTNVQELSEIS
GSLQRAFIENTFDGWKELETKLALEFCEKECEKTVKADIIFLVDGSESMTEEQFKSTKSF
LASVVNQNTVGENLTRFGVILYSRTAKSEFTLKEIYSKGKVLEALQQLVQPKGGTYTGAA
LAYSLPYFNAEHGGRRAIRVPQILMVITDGDSRDSDRLKAESDALRQNGITVISIGVEGA
NRSELETMAGGDTSKVFFVDNFEGLETLYKKISPVICNTTKRACNQTDLVFLLDYSSSIN
QSQHTIMLNFTASVVDNFNVSKELAHVGLAQFSDDPKDEFYLNTYNNKTNMTGHILNMPY
NGGNTYLGEALVHIRDYFHESKGSRRDVPKNLVLITDGNSHDDVEDAAEALRKMGITIFA
IAVGDVFYLQLLQITGTPEKVFNVDSFDSLANIKKKIIDEICDTVPDDEPEIDCTIDVAI
GFDITDTSGSNNMLIRDYIQHLEEIVHHISHISTVENLCCTGVPRSPVKTQIAFHLVDRD
GRALYDTSFPDFSEDVLKKVLSWKLSQPTYFNSELLNFFKERFKARSKATVKVLMIFSDG
LDENVVSLQRESKLLRESGVSALLAVALRGTDHAQLQKVEFGRGFGYTDQLIISMPSIGS
TIFQQISTVTARECCGVMCKCWGDKGPRGLPGPPGVKGEEGERGHPGFPGEEGVSGERGP
PGLPGLQGIRGCPGSRGQKGYRGISGNKGDDGEDGLNGIDGEQGETGHSGLKADRGPSGN
PGIPGTKGELGLKGQKGLRGDPGTPGVDNTRPGPKGDPGSPGRPGDPGSDGYGGDGGLDG
NPGRNGRRGPSGEKGSPGEKGNRGPSGIPGAAGPQGPAGEKGEPGPKGTPGFPGNQGEHG
SVGEPGLPGSRGPNGQKGQPGEPGVKGGPGPPGPRGMPGLDGRDGFGPEGPKGSKGDAGF
PGYPGIPGDEGAKGPKGYPGSKGNRGRGGNSGRPGEPGEPGDDGYPGHKGPKGPPGNRSL
SECQLINKIRDYCACSHGESQCPVYPTELVFGLDMSDDVTPTAFERQRSALLHLLEDLSI
AENNCPQGARVAVVGYSAYTKYLIRFQDHHRKSPLIEAVKNIALEKTSNKRQLGAAMRFV
GQNIFKRVRAGFMVRKVAVFFTNGASQDIDAILAAIMEYRALNIVPAIISPRNVPAINQA
MEADDTGNSIFTVLRRPQEPAADLRRVKNCAICYDPCRRAEECAFIQEPVAPQQVDMDLV
MVLDSSREIQADEYTGAQQLLSSVVEQLAVSPQPRRAGRQARVALVQQINKVEFGLQTYQ
NAEDMKTYMMQNMQQQGGSLALGQMLDYTLREVLLKAGQPRSKRAVLTVVGTKTAYRDQA
KLRYISQKAKCEGVALFVVAVGDRYKRREVEELASVPTQQHLIRFNRLKADEQGYAQRFI
RVFLSALNKGLNAYPPPPFKLTCSQLSEPDDTLDTNSQGSADWELEISDQPRNWFQEQKG
IMARNLSVINTLNKSSLSGAGLTDVNVEPTKQLHSFVSTDICFLSKDAGDCVNYTVKWFF
DHKRSVCSRFWYSGCGGNKNRFETQAECERVCLSKHR
NT seq
7494 nt
NT seq
+upstream
nt +downstream
nt
atgagcagtcccaacatgacggggaggacaggtctcctcttcagcctcatcacagcggca
cttttctgtggcgtcgctgctcagacagtcagagagtgtgaaaacgtcaccgtcggtgac
atcgtcttcctagttgatggctcgaccagcatcactaataaaaactttcaggacatccgc
acatttcttcgcaacaccatccagggctttgaaatcgaccccaacaaagttcagatcggt
ttggtgcagtacagcgatgatccttatccggagttccagctgatggatcacagggacaag
aattccctgctggctgcagtggaaaaccttacccaccgaggaggcggcacaaaaaccggc
aaagccatagacttcctccggacggagtacttcaccaaagaggccggcagccgagctgag
cgacgtgtgcctcagattgctgtggtcatcacagatggcgcatccactgatgacgtattg
gaacctgccaggagactgaggcagcacggtgtcatcgtgttcgccatcggggttggaaag
ttcaaccagacacagctcataaccatcgctaactggccctcggagcgcttcgtcctcacc
agtgacagctaccagaagctccaggatcagaccaacagcctgctggaaactgtctgtcac
agtttggaggatcagcggctagctttggtcgacaggtttgcagatattttcttcctggtg
gacagtggaatagcttcaaaccagttcaccctgtttagaaatgagcttttcagactgttg
aatcgactggaagttggagcgtctggttaccgcgtcggtttggcccagtacggtcaggac
gtcagagttgactttcgtctcaacactcatcaaaccaagcagcagattgtggctgctgct
cgacgtttccgactgcgttcacaaacaggccaaccacgaaatcttggacaagctctgtcc
tacgctaaagagaacttcttcactgtcgaggcaggaggccgtgcagaccagggaatcccg
ccgtatttggttgtagtggctggaaaagactcggatgatcctgtgttttggtctgctgaa
aatctgaaagacgagggggtaattattgtggggatggacgcaggtgcgacacgggatgct
ctggaccgctttgccagccctggctatatctttgattcttcgagagtaactctgctgatt
gacctgctcacaacccagagagtggagactgtcactgaagattgcaaaacagctaacaag
gcagacattgtgttcattgttgatgagtctggaagcattggagaggaaaacttcaggctg
atgcgtgacttcctgcgctcagtcatcagcgtcctggaaactggtcaatctaaaatccga
gtaggcattgttacatacaacgacgtgccgactgctcatgcctacctcgacatgttcgga
gacaaggaagatattttgaagttcatcagcttcctgccttaccgtcaaggtggtacaaaa
actggggctgccctacacttcacccttgaaaacatcttcactaaagaaaagggcagcagg
aaggatgtcccaaaggtagcagtggtaatcacagacggtgaatcccaggataatgtgaag
gaacctgcaatcgctctccgtcgagctggtgtcacagtttttgctgtcggaatcaaaaaa
gccaataaaactgaactgctggagatggcatcttaccccaagtctaagtttgtttttact
gtggacagtttcgtcaagctgaaacccctgaaagaaactctgcaggcaaccctgtgcaac
accatcatccagatcggggtccaggacaaggaaagtgatgcagagactaaaaaagcatgt
aaagaaaaggaccaagctgacattttcttcctgatggatgactcagagagcattaaagat
gcagatttcgcagacatgctgaagtttatcattgagtttcttcgtaccttccgtattggg
ccagaccatgttcgcatgggtcttgtgaaatattcagattccccctctctacagtttgac
ctaacacagcactcagatgctaagacaatggaaaaggctgtgaaggaaatcattcatgaa
aaaggtggaacattcacaggagaagcactgtcatccatgaaaggacattttgagaatgca
aagacgagccgtggctacaaagtctcagagtacctgatcgtcatcaccgatggaaaatcc
gaagataaagttcaaattcctgcagaagaactgagggcgcagggggtcatcatctatgcc
atcggggtgaatgcctcaaatgataatgagctgaatgagattgctggggatccaaggaga
aagttttttgtccatagttttgatgccctgaaaaccatcaaaaataacatcaccagagag
atctgttttctggaagcttgtaaagacacacaaggcgacatatttttcttaactgacagc
tctgagaggatctctgaggaaggcttccaaaagatgaaaaatttcacaaaatctgtcatt
agcaagtccatcattgggctggataaggtgcacattggtgttatgcagtacagcaccaac
acacgcctggagttcgacctcaccacacactacagcctggaaggaatgctaaacaccatc
gatggtatgatgcagaataagacaagaactcgcactggcagggccatcacagaagtctcg
cagtattttgatgcagccagaggagggcgtccttgggtgaagcagtggttggtcgttata
acagacggtaaatccgaagatagcgtcagagaaccagctcgtgctctgagggccaaagga
gtggtgatctatgccattggagtgaataagaccaacgtgcaggaactgtcggagatcagt
ggctcattgcagagggcctttattgagaatacctttgacggatggaaggaactagagacc
aaactggccttggagttctgtgagaaagagtgtgaaaagacagtaaaggctgatattatt
tttctggtggatggttctgaaagcatgacagaggaacagttcaagagtacaaaaagcttt
ttggcttcagttgtgaaccagaacacagttggtgagaatctgactcgttttggagtcatt
ctctactctagaacagccaagtccgagtttactctaaaggaaatttactccaaaggaaaa
gtccttgaagctctgcagcagctggtacaaccaaaaggaggcacctacacaggtgccgcc
ttggcatactcgctgccgtactttaatgctgaacatggcggccggagagcaatcagggtg
cctcagattctcatggtgatcacagatggagactctcgtgattctgacagattgaaagca
gaatctgatgctctgcgacaaaatgggatcacagtcatcagtatcggagtggagggtgca
aacaggagcgagctggagaccatggctggtggcgacacatccaaagttttctttgtggat
aattttgagggtttagaaactctgtacaagaagatttctcctgtcatttgcaataccact
aagcgagcttgcaaccagacagacttggtcttcctgctcgattactcgagcagcatcaac
caaagccagcacacaattatgttaaacttcacagcaagtgtggtggacaactttaatgtc
agtaaagagttggcacatgttggacttgcacagttcagtgatgatcctaaagatgagttt
taccttaacacgtacaacaacaagacgaacatgactggacatatccttaacatgccatat
aacggtggaaacacttatcttggagaagccttggttcacattagggactactttcatgaa
tcaaagggaagccgcagagacgttcccaagaacctggtgttgatcacagatggtaattct
catgatgacgtggaggatgccgcagaagcgctcaggaaaatggggattacaatattcgcc
attgctgttggagatgtcttttacctacagctcctgcagatcactggcacgccagagaag
gtgtttaatgtcgacagctttgacagcttggcaaatatcaagaaaaagatcattgatgaa
atctgtgacactgtgcctgatgatgagccggaaattgattgcaccatcgacgttgcaata
ggatttgatattactgacacgagtggatccaacaacatgctgatccgtgactacatccaa
cacctggaagagattgtccatcatatttcacatatttcaacagtagaaaacttgtgctgc
actggcgtcccccggtccccggtcaagacccaaatcgccttccatttggtagacagagat
ggcagggccttgtatgatacaagttttccagacttcagtgaggacgtgttgaagaaagtc
ttgagctggaagttgtcccagccgacctactttaactctgagctgctgaatttcttcaag
gagaggttcaaagccaggtccaaggctactgtcaaggtcttgatgatcttctctgatgga
ctcgatgaaaacgtcgtgagtctacagcgggaatcaaagctgctgcgagagtctggagtc
agcgccctgctggccgtggctctgaggggcactgaccacgctcagctacagaaggtggag
tttggccgtggattcgggtacactgatcagctcataatcagcatgccgagcatcggcagc
accatattccaacagattagcactgtgacagctcgggaatgctgcggagtgatgtgcaaa
tgttggggagacaaaggcccccgtggtcttccaggccccccaggggtaaagggtgaggag
ggagagcggggtcatccaggtttcccgggagaagaaggagtcagtggcgagcgaggtcct
cctggacttcctggacttcaggggatccggggctgtcctgggagcagaggacagaagggc
taccgaggtatctcaggcaacaagggcgacgacggcgaggatggactgaacggcatcgat
ggagagcagggagagacgggacacagtggactgaaagcagaccgaggaccgtcgggaaac
ccaggcatcccggggacaaaaggcgagctggggctgaaaggacagaagggactgagagga
gacccgggcaccccgggtgtcgacaacaccagaccaggacccaaaggagaccccggcagc
ccagggagaccaggtgatcctggttcagacgggtacgggggtgacggtggactcgatgga
aacccgggtcgtaacggaagaagaggtcccagtggtgagaaggggtcacctggcgagaaa
ggaaaccgaggaccttccggtatcccaggtgctgctgggccacagggccctgctggggag
aaaggggaacctggacccaaaggaacacctggttttccaggaaatcagggtgaacatgga
tctgttggagaaccagggctacctggaagtcgtggccctaatgggcagaagggccaacca
ggagaaccaggtgtgaagggtgggccgggaccaccgggacccagaggaatgccgggtctg
gatggtcgtgacgggtttggacctgaaggaccgaaaggttccaagggagatgctggtttt
cctggttaccctggtataccgggcgacgaaggtgcgaagggaccaaaaggatatccagga
tccaaggggaacaggggtcgtggggggaactcgggcaggccaggagaaccaggtgagcct
ggagatgacggatatccaggacacaaaggcccaaaaggtcctcctgggaacagaagcctg
tctgaatgccaactgatcaacaaaatcagagactactgtgcttgttcacacggtgagtca
cagtgtccggtctaccccactgagctggtgttcggcttggacatgtctgacgacgtgact
ccgacggccttcgagaggcagcgctccgccctcctccacctgctggaggacttgagcatc
gctgagaacaactgtccacaaggcgctcgtgtggctgtggttggatacagtgcctacacc
aagtacctgatccgcttccaggaccaccatcgcaagagtccgctgatagaagctgtgaag
aacatcgccctagagaagacgtccaacaaacgccagctgggcgccgccatgcgctttgtg
ggtcagaacatcttcaaacgagtgcgagctggcttcatggtgaggaaggtggccgtcttt
ttcaccaatggggcgtcccaggacatcgatgccattcttgctgccattatggagtaccgg
gctcttaacattgtcccagcaatcatctccccgaggaacgttcccgcgattaatcaggcg
atggaggctgacgacacaggaaactccatcttcacggtgctgaggaggccacaggagccg
gctgctgacctgaggagggtcaagaactgtgccatctgttatgacccctgcaggcgtgca
gaggagtgcgccttcatccaggaaccagtggcacctcagcaggtggatatggacctggtc
atggtgctggacagctccagggagatccaggccgatgaatacaccggtgcccagcagctg
ctgagctctgtggtggagcagctggccgtgagtccacagccccgccgagccggccgtcag
gcccgagtagctctggtccaacagatcaacaaggtggagttcggcctgcagacctaccag
aatgctgaagacatgaagacgtacatgatgcagaacatgcagcagcagggcggctctttg
gcactgggacagatgctggactacaccctgagggaggtgctgctgaaggccggccagccg
cgcagcaagagggccgtcctgactgtggtgggcaccaagacggcctacagggaccaggcc
aagctgcgctacatctcccagaaggccaagtgtgagggggtggcgctgtttgtggtggcg
gtgggtgatcgttataaacgcagggaggtggaggagctggccagcgtgccgacacagcag
cacctgatcagattcaacaggctgaaggccgacgagcagggctacgcccaacgcttcatc
cgagtcttcctctccgccctcaacaagggactcaacgcttatcctccacccccatttaaa
ctgacctgcagccagctgtcggagccagacgacactctggacacaaacagccagggctca
gcagactgggagctggagatttctgatcagccgagaaactggtttcaggagcagaaagga
atcatggcaagaaacctgagcgtcatcaacactctgaacaaaagttcactttcaggagct
ggcctcacagatgtgaacgtggagccgacgaagcagctgcacagctttgtgtccacagac
atctgcttcctcagcaaggatgctggcgactgtgtgaattacaccgtcaagtggttcttc
gaccacaaacgcagcgtctgctctcgcttctggtacagcggctgcggaggcaacaaaaac
cgctttgagacacaggcagaatgtgagagagtttgtctgtcaaagcacagatga
DBGET
integrated database retrieval system
