Oreochromis niloticus (Nile tilapia): 100709112
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Entry
100709112 CDS
T06104
Name
(RefSeq) collagen alpha-1(XIV) chain isoform X1
KO
K08133
collagen type XIV alpha
Organism
onl
Oreochromis niloticus (Nile tilapia)
Brite
KEGG Orthology (KO) [BR:
onl00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
onl00535
]
100709112
Proteoglycans [BR:
onl00535
]
Extracellular matrix (ECM) proteoglycans
Others
100709112
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
fn3
Collagen
VWA_2
Ig_DSCAM-DSCAML_C
Pur_ac_phosph_N
VWA_3
DUF4959
Fn3_nematode
Motif
Other DBs
NCBI-GeneID:
100709112
NCBI-ProteinID:
XP_019206395
Ensembl:
ENSONIG00000007189
LinkDB
All DBs
Position
LG22:2610981..2785350
Genome browser
AA seq
1866 aa
AA seq
DB search
MWFTVRLSLCLLGFFLISVFPHAAQGQVSSPRRLRTKVLSPTKLHVSWKEPKGQFESYKV
VYTTRPGGEQKVVQASKQEPKLVIEDFDPSKTYNFKIIAVHEGQESKPLQGKHEAQQSAV
EMAPSHGRKNSSVTQENNEISEAEAGFMCKTPAIADIVILVDGSWSIGRINFRLVRTFLE
NLVKAFSVEIDKTRIGLAQYSGDPRIEWHLNAHTTKESVIDAVKNLPYKGGNTLTGLALT
FILENSFKPESGSRPGVPKIGILITDGKSQDDVIPPAQSLKDAGIELFAIGVKNADENEL
KAIASPPEETHVYNVADFSVMSDIVEGLTKTVCDRVEQLDKKIKGGAEPAPPPAIVAAPR
DLVTSEITARSFRVTWTHASGQVEKYRVVYYPASGGQPEEKVVQGTQNSVELSYLNSLTE
YQVAVFAVYRSSASEALRGSATTLALPTVNNLELFDITHSTMRVRWKAAAGASGYMILYA
PLTEEDASDEKEVKVDDSVTEVELEGLTPATEYTVTVYAMYGEDASDPMTSQQTTLPLIP
ARNLRFSEVDHSSARITWDSASRKVKGYRIMYVKTNGVQTNEVDVGRVTTWLLKNLTSLT
EYTVGVFAVYDEGQAEVVTDSFTTKTVPDPVDLRSSDISTDSFRVSWGHPASDVVLYRLT
WTPTDGDESNEVLVNGNINTYLIKDLTPSTEYEVLLAAIYGNELESDEVILVESTAEKTT
TIATTTTTVAAPRYGVRSMKIDEETTFSMRVSWQPVDPRNVRHYRLSYISARGDRAAETR
TVPTGQNSLVLQPLLSDTEYKVSITPVYPEGDGPAAAETGRTLPLLAPRNLRVSEEWYNR
FKISWDVPPSPTMGYRVIYQPLTAPGQALETFVGEDVNTMLIVNLLSGTEYSVKVIASYS
TGSSEALTGRAKTLYLGVTNLSTYQVRMNGLCAQWQPHRHASAYRAALESMVGSQKQETR
VSGGASRHCFTNLKPNMQYKISIYAQLQDGSEGPAVTTTEKTLPVPTPPPTKPPTTTPPP
TIPAAKEVCKAAKADLVFLVDGSWSIGDENFLKIIRFLYSTSGALDRIGPEGTQVAIAQF
SDDARTEFKLNSYSDKEGLLDAINKISYKGGNTKTGRAIQHVKKNIFTEEAGARRGIPKV
LVVLTDGRSQDDVNKVSKEMQMEGYIVFAIGFADADYGELVSIASKPSDRHVFFVDDLDA
FKKIEEKLVTFVCEAATATCPAVPMSGSTMPGFRMMELFGLVENRYSSMSGVSMVPGTFN
TFPCFHLHSDALLAQPTRYIHPEGLPSDYTITLLFRLLADTPEEPFALWEILNKNNEPLV
GVILDNGGKTVTFFNNDYKGEFQTVTFEGPEIKKLFFGNFHKLHLAISKTSAKVFVDCKM
VSEKTVNAAGNISTDGLEVLGKMVRSRGNKDNSAPFQLQNFDIVCSTSWANRDKCCELPS
LRKEVDCPALPKACTCTQDSKGPPGPAGPPGGPGIRGARGERGEPGPVGPTGPVGDTGLP
GPQGPPGRQGPSGRSIIGPPGSPGERGQKGDVGQQGTQGVPGRPGGPGREGPPGPRGLPG
KDGPPGTQGPPGTIGTPGAPGSPGSTGPPGKQGELGPPGPPGTKGEKGERGDLQSTASVQ
AIARQVCEQLIQSHMARYNSILNHVPSPPVSIRTVPGPPGEPGREGPPGPQGEQGPPGRP
GFPGQNGQNGQPGERGQPGEKGDKGSPGVGVQGPRGPPGPPGPQGQGRPGSSGPSGRPGN
PGVPGRPGAPGPIGPQGPPGYCDQNSCVGYNVGEGEDVTDGGAVPAVQLPPSVFQNYGEV
EEDDPYRYYQPNYPAPRPVAPDDPALALGDIELRSPGVYRTSRSVKEEEEKVGSKRRLKR
GAAWTN
NT seq
5601 nt
NT seq
+upstream
nt +downstream
nt
atgtggttcacagtcagactgagtctctgcctgctgggcttctttctcatctctgtgttc
cctcacgcagcacaaggccaagtttcatcaccaagaaggcttcgcaccaaagtcctgagc
cccaccaagctgcacgtgtcttggaaagaacccaaaggacagtttgaaagctacaaagtc
gtttacaccacacggccaggcggagagcagaaggtggttcaggcttcaaagcaggaacca
aaactggtcatcgaggactttgatccttctaaaacttacaactttaagatcattgcagtc
cacgaggggcaggagagcaaacctcttcagggcaaacatgaagctcagcaatcggctgtt
gaaatggctccatcccacgggagaaaaaacagcagcgtcacacaggagaacaatgagatc
tcagaagctgaagcgggatttatgtgtaagactccagccatagccgacatcgtgatcctg
gtagacggttcctggagtatcgggcggatcaacttcaggctggtcaggaccttcctggag
aacctggtcaaggcgttctctgtggagattgacaagactaggattggtctggctcagtac
agtggagaccccaggatcgagtggcatctgaacgctcacaccactaaagagtctgtaatc
gatgctgtgaagaatctgccatataaaggaggaaacacactgacaggtctggctctgacc
ttcatcctggagaacagcttcaaaccagagtcaggctccagacccggtgttcccaagata
ggaatcctcatcaccgatgggaagtcccaggatgatgtcatacccccagcgcagagcctg
aaggatgctgggattgaactgtttgccattggtgtgaaaaatgctgatgagaatgagctg
aaggcgattgcctcaccgccagaggaaactcacgtctacaacgtggcagacttcagcgtg
atgagcgacatcgtggaaggtctcaccaagaccgtttgtgaccgcgtggagcagctcgac
aagaagatcaaagggggggcggagcctgcgccgccaccagccatcgtggctgcacctcgt
gacctcgtgacctcagagataactgctcgcagtttccgggtgacatggacacacgcgtcg
ggtcaggtggagaagtaccgagtggtgtactaccccgccagtggggggcagccagaagaa
aaggtggtccaggggacccagaacagcgtggagctgagctatctgaactctctgacagag
taccaggtggctgtttttgccgtctatcgcagctccgcaagtgaagccctgagaggaagt
gctactacattggccctgcccacggtgaacaacctggagttgtttgatattactcacagc
actatgcgggtccgctggaaggccgccgctggggcttctgggtacatgatcctgtacgcc
ccgctgactgaggaggacgcttcagatgagaaggaggtgaaggtggatgactcggtgact
gaggtggagctggaaggattgactccagctactgagtacacggtgacagtttacgccatg
tacggggaggacgccagtgaccccatgaccagccagcagaccacattaccgctgatccca
gcgaggaaccttcgtttctcggaggtggatcacagctctgcccggatcacatgggactcc
gcctccaggaaggttaaagggtaccgcatcatgtacgtcaaaaccaatggagtccagacc
aatgaggtggatgttggccgtgtgacaacctggctgctaaaaaacctgacatcactgacg
gagtacactgttggtgtgtttgccgtctatgatgaaggacaagctgaggttgtgacagac
agcttcaccacaaaaactgtcccggacccagtggacctgaggagcagtgacatctccaca
gacagcttcagggtgtcctggggtcacccggcgtctgatgtggtgctttatcgactcacc
tggacacccaccgacggagacgagagcaatgaggttttggtgaatgggaatatcaacacc
tacctgataaaggacctcaccccctcgacagagtacgaagtcctcctggccgccatttac
gggaatgagctggagagtgatgaggtgatcctcgtggagtccaccgctgaaaaaacaacc
accattgccacgacaaccaccaccgtagcagctcctcgatatggggtgagaagtatgaag
atcgatgaagaaactacgttcagcatgcgggtgtcctggcagcccgtcgaccccagaaat
gttcgacattatcgactgagctacatcagtgcgaggggagaccgagcagcggagacgaga
acagtgcccactggtcagaatagcctggttctgcagcctctgctgtcagacacagagtac
aaagtctccatcacgcctgtttaccccgagggggacggaccggcagccgccgagacggga
cgaacgcttcctctcttagctcccaggaacctgcgcgtctcagaggaatggtacaatcgc
ttcaagatcagctgggatgttccaccgtcgcccacaatggggtacagggtcatctaccag
cctctaactgcccctggacaagctctggaaacctttgtgggggaggatgtgaacaccatg
ctgatcgttaacctgctgagtggtaccgagtacagcgtcaaggtcatcgcctcctactcg
actggatccagcgaagccctgacaggaagggccaagaccttgtacctgggcgtgactaac
ctgagtacctatcaggtgagaatgaatgggctgtgtgcccagtggcagcctcaccgacac
gccagcgcctacagagcggccctggagtcgatggttggcagtcagaagcaggagacgaga
gtgagtggaggcgcgagcaggcactgtttcaccaacctgaagcccaacatgcagtataag
atcagcatctacgctcagctgcaggacgggagcgaagggcccgcggtcaccactactgag
aagacactacccgtcccgaccccaccgcccaccaagcccccgaccaccacgcctccaccc
acaatccctgctgccaaggaagtctgtaaagctgccaaagcagacttggtgttcctggtt
gacggttcctggagtatcggagatgaaaacttcctgaagatcatccgtttcctgtatagc
accagtggagctctggaccggatcgggccggaaggcacacaggtggctattgcccagttc
agtgacgatgcccggacagagtttaagctgaactcctacagtgacaaggagggtctgctg
gacgccatcaacaagatctcctacaagggaggaaacactaagacaggtcgagccatccaa
cacgtgaagaaaaacatcttcacggaagaggcgggagcgaggagaggaatccccaaagtc
ctcgtggtgctcaccgacggtcgatctcaggatgacgtcaacaaagtctccaaagagatg
cagatggaaggttacatcgtgtttgccattggcttcgctgatgctgactacggggagctg
gtgagcatcgccagtaaacccagtgacaggcacgtcttctttgtggatgacctggacgcc
ttcaagaagatcgaagagaagctggtgacctttgtgtgtgaagctgctacagccacgtgt
ccggctgtaccgatgagcggcagcacgatgccaggctttcgcatgatggagctgttcggg
ctcgtggagaatcggtacagcagcatgtctggcgtttccatggtacccggcacctttaac
acgttcccctgtttccacctgcacagcgacgcgctgctggcacagccaaccaggtacatc
catcctgaggggctgccttctgactacaccatcaccctgctgttcaggctgctggccgac
actcccgaggagccttttgcgctctgggagatcctcaacaagaacaacgaacctctagtg
ggagtcatcctggacaatggtggaaaaactgtgacgtttttcaacaacgactataaagga
gagtttcagacagtcacctttgaagggccggaaataaagaagctcttctttggaaacttc
cataagcttcacctcgccatcagtaagacgagcgccaaagtgttcgttgactgcaagatg
gtgtctgagaagaccgtcaacgcagcaggaaacatcagcactgatgggctggaggttctt
ggtaagatggtccgctccagagggaacaaggacaactctgcaccgtttcagctccagaac
tttgatatcgtctgcagcacctcgtgggccaacagagacaagtgctgtgaacttcccagt
ctgaggaaggaggtagactgcccggccttgcctaaagcctgcacctgcacccaggacagc
aaaggccccccaggccctgctggaccaccaggaggtccaggaatcagaggagccagagga
gaacgtggagagccaggccctgtgggaccaactggtcctgttggagatacgggtcttcca
ggacctcagggacccccaggacgacaaggacccagtggacgctccattatcggacccccg
ggcagtcctggagagagaggtcagaaaggtgatgtgggacaacaaggaactcagggggtt
cctggaagacccggaggtccagggagggaaggacctccaggacccagaggactgccaggc
aaagatggccccccaggcacacagggccccccaggaaccatcggaactccaggagctcca
ggatccccaggaagtacaggacctccaggaaagcagggagagcttggcccaccgggacct
cctggaactaagggagagaaaggtgaacggggagatctccagtcgacagcatcagttcag
gccattgccagacaggtctgtgagcagctgatccaaagccacatggcgcgctacaacagc
atcctgaaccacgtgccgagtcctccggtgtcaatccgcacagttcccggaccaccagga
gagcctggtcgagaaggacccccaggaccacagggagaacagggacccccaggcagacca
ggcttcccaggacagaatggacagaatgggcaaccaggagaaagagggcaaccaggagag
aagggtgataagggatctccaggtgttggtgttcaaggacccagaggacctccaggacca
cctggtccccagggacagggcagaccaggtagctctggaccctcaggacgacctggaaat
cccggagtacccggtcggcccggagcccccggtcccatcggcccccaggggcctccgggt
tactgtgatcagaactcctgtgtgggctacaatgttggagaaggcgaggatgtcactgac
ggcggcgctgtccccgcagtccaactaccacccagcgtcttccagaactacggcgaggtc
gaggaagacgatccgtaccgctactaccagcccaactacccggcccctcgaccagtggcg
cccgatgatcccgcactggccctgggtgacattgagctgaggtctcctggtgtctaccgc
acctctcggagtgtgaaggaggaggaagagaaagtcgggtcgaagagacgactaaagaga
ggcgccgcgtggactaactga
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