Oreochromis niloticus (Nile tilapia): 100709718
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Entry
100709718 CDS
T06104
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
onl
Oreochromis niloticus (Nile tilapia)
Pathway
onl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
onl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100709718
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
onl03041
]
100709718
03009 Ribosome biogenesis [BR:
onl03009
]
100709718
Enzymes [BR:
onl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
100709718
Spliceosome [BR:
onl03041
]
Complex A
U2 snRNP components
U2 related factors
100709718
Complex B
100709718
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
100709718
Ribosome biogenesis [BR:
onl03009
]
Eukaryotic type
90S particles
Helicases
100709718
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
SRP54
nSTAND3
AAA_29
Flavi_DEAD
AAA_25
Motif
Other DBs
NCBI-GeneID:
100709718
NCBI-ProteinID:
XP_003450368
Ensembl:
ENSONIG00000007642
UniProt:
A0A669C349
LinkDB
All DBs
Position
LG3:11792004..11818591
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AA seq
751 aa
AA seq
DB search
MSKRHRLDLGDDHSSSKKRSSDGRDRDRDERSRDRDRDRDKDRDVKPSGVPTNPAAGIAG
FLKQPGIQQQVNPFTNLPHTPRYYEILNKRLQLPVWEYRERFTEILMRNQSFVLVGETGS
GKTTQIPQWCVDMVRSLPGPKRAVACTQPRRVAAMSVAQRVADEMDVMLGQEVGYSIRFE
DCSSAKTVLKYMTDGMLLREAMNDPLLERYGVIILDEAHERTLATDILMGVLKEVVRQRP
DLKVIVMSATLDAGKFQVYFDNCPLLTIPGRTHPVEIFYTPEPERDYLEAAIRTVIQIHM
CEEDEGDVLLFLTGQEEIDEACKRIKREVDDLGPEVGDIKIIPLYSTLPPQQQQRIFEPP
PPNKPNGAIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVTAISKA
SAQQRAGRAGRTRPGKCFRLYTEKAYKTEMQDNTYPEILRSNLGSVVLQLKKLGIDDLVH
FDFMDPPAPETLMRALELLNYLAALNDDGDLTELGSMMAEFPLDPQLAKMVIASCEFNCS
NEVLSITAMLSVPQCFVRPTEAKKVADEAKMRFAHIDGDHLTLLNVYHAFKQNHESTQWC
YDNFVNYRSLMSADNVRQQLSRIMDRFSLPRRSTEFSSRDYYINIRRALVTGFFMQVAHL
ERTGHYLTVKDNQVVQLHPSTVLDHKPEWVLYNEFVLTTKNYIRTCTDIKPEWLVKIAPQ
YYEMSNFPQCEAKRQLERIIAKLSSKEYTQY
NT seq
2256 nt
NT seq
+upstream
nt +downstream
nt
atgtctaagcgacatcgtttagatctgggtgacgatcattcgtcgagtaaaaagaggtcc
tccgatgggcgcgacagagaccgtgacgagaggtcgcgggaccgcgatcgagaccgtgac
aaggacagagatgtgaagccgtccggggtgcctacgaacccggctgcaggcatcgccggc
ttccttaagcaacccggtatacagcagcaggtcaaccccttcactaacctgccccacacg
ccacgctactatgagatcctcaacaagcggctgcagcttcccgtgtgggagtacagagag
cgcttcactgagatcctgatgcggaaccagtcttttgtgctggtgggagagacaggctct
ggaaagactacacagatcccccagtggtgcgtagacatggtccggtcgttgccgggacca
aagagagccgtagcctgcacccagcccaggagggtagcagccatgagcgttgcccagagg
gttgcagatgagatggatgtcatgctgggccaggaggtgggctactccatcaggtttgag
gactgcagctctgccaagaccgtcctcaagtacatgacagatggaatgctgctgcgggag
gccatgaacgatcccctgctggagcgctatggtgtcatcattctggacgaggcccacgaa
cgcacattagctacagacatcctcatgggggtcctcaaggaggtggtccgccagaggcct
gacctaaaggtcatcgtcatgagcgccacactcgacgccggtaagttccaggtgtacttt
gacaactgcccactgctaaccatcccaggacgcacgcaccccgtggagattttctacaca
ccggagccagagcgggactatctggaggcggccatccgcactgtcatccagatccacatg
tgtgaggaggatgagggggacgttttgctcttcctcactggacaagaggaaatcgacgaa
gcctgcaagcgaattaagagggaggttgacgacctggggcctgaagtcggcgatatcaaa
atcatcccgctgtactcgacgctgcctccacagcagcagcagaggatctttgagccaccc
ccgcccaataaaccaaatggtgccatcggaagaaaggtcgtcgtgtcaacaaacatcgcc
gagacgtccctgaccatcgatggggtggtgtttgtaattgatcccggatttgccaagcaa
aaggtgtataacccacgaatccgagtggaatcccttttggtcacagccatcagcaaggcc
tcagcccagcaaagggcaggccgtgccggacgtacacgcccaggaaagtgtttccggctt
tacacagagaaagcttacaagacagaaatgcaggacaacacgtatccagaaatcctgagg
tctaatctgggctccgtggtgctgcagctcaagaaactgggcattgatgacctggtgcat
ttcgacttcatggacccaccagctccagagaccctgatgcgagccctggagttgctgaac
tacctggcagcgctcaacgacgacggtgacctgaccgagctgggctccatgatggcagag
ttccccctggacccccagctggccaagatggtcatcgccagctgtgaattcaactgttcc
aacgaggtcctctccatcactgccatgttgtcagtcccacagtgctttgtgcgacccacg
gaggccaagaaggtggctgacgaggccaagatgcgcttcgcccacatcgacggagaccac
ctaacgttgctcaacgtctaccatgcctttaaacagaaccacgagtccactcaatggtgc
tatgacaattttgtcaactaccgctcgctgatgtcagcagataacgtacggcagcagctg
tccaggatcatggaccgcttcagcctaccgcgaaggagcacggagttcagcagcagagac
tactacatcaacatccgccgagcactggtcacaggctttttcatgcaggttgctcacctg
gagcgcacaggccactacctgaccgtgaaggacaaccaagtcgtacagctgcacccctcc
accgtgctggaccacaaaccggagtgggtactttacaacgagtttgtgctcaccaccaag
aattacatccgcacctgcacagacatcaaacccgagtggctggtgaaaattgccccgcag
tactacgagatgagtaacttcccccagtgtgaagctaagagacagttggagcgtatcatt
gcaaaactctcatccaaggaatacactcagtactaa
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integrated database retrieval system
