Oreochromis niloticus (Nile tilapia): 100710000
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Entry
100710000 CDS
T06104
Name
(RefSeq) CCR4-NOT transcription complex subunit 3 isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
onl
Oreochromis niloticus (Nile tilapia)
Pathway
onl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
onl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100710000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
onl03019
]
100710000
Messenger RNA biogenesis [BR:
onl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
100710000
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
100710000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5646
Motif
Other DBs
NCBI-GeneID:
100710000
NCBI-ProteinID:
XP_005457618
Ensembl:
ENSONIG00000007047
UniProt:
A0A669BWR8
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Position
LG22:complement(6396811..6441268)
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AA seq
918 aa
AA seq
DB search
MADKRKLQGEIDRCLKKVAEGVEQFEDIWQKLHNAANTNQKEKYEADLKKEIKKLQRLRD
QIKTWVASNEIKDKRQLVENRKLIETQMERFKIVERETKTKAYSKEGLGLAQKVDPAQRE
KEEVGTWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKEKQDRIEELKKFIERHRYHI
RMLETILRMLDNDSVQVEAIRKIKDDVEYYIDSSQDPDFEENEFLYDDLDLEDIPQSLVA
TSPPGHSHLEDEIFQQSSSTPTSTTSSSPIPPSPATCTTENSEDDKKRGRSTDSEVSQSP
VKNGNPSSSLSSSSSSSSASSSVSGLTSSSMVSMVTIAGGGSSSSGGNSHHSNSAGHLSN
TSAGSYSNATQQPPHPSAQQQQAKNSVSSSSSAPISNSNTSTNSHPASLAASPPNASTQE
LRASNSQPQAPSGSTPTSNSLGLSLGLSLGKAMPGAVTTSPMSGGLGLSGMPASLTGTMA
GLLSSNTPAPYAQAVGSSLPGSLGGVSTATTNSAVGSIGSGNMTVGGPTSSSGGLLGAAP
GAVGSGILGLGSSQSGVQGSSLVSPSSVGGLAPGSGVGVIGSNGGSSGSAGSGVVGGNSL
PARPPSRQKQNGSTSYSAVVADSTTDSALNSASQSQSSQPSSLTSIANQPKDTGPSLLGS
MSLSSSSPSPAPYSEAKTASGSNLLNGPMSYSQQSSDSIKPQEPLSSLKSMAERAAMSSG
IEGDVTSLHLTSEIFPSSTTAPSGPPSAPQPSLSEVSIPPSLGVCPLGPVPLSKDQVYQQ
AMQEQAWTHMPHPSDSERIRQYLMRNPCPTLPFHHQVPPPHSDTVEFYQRLSTETLFFIF
YYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTYIYFDYEKWGQR
KKEGFTFEYRYLEDRDLQ
NT seq
2757 nt
NT seq
+upstream
nt +downstream
nt
atggccgataaaaggaaacttcaaggtgaaatagatcgatgtctgaaaaaagtagcggag
ggagtggagcagtttgaggatatttggcaaaagcttcacaatgcagccaacacaaaccag
aaggagaaatatgaagcagacctcaagaaagagattaaaaagctacagcgtcttcgagac
cagatcaagacgtgggtggcatcaaacgagatcaaagacaaaaggcagctagtagaaaac
cgcaaactcatagaaacgcaaatggagcgattcaagatagtggaaagagaaaccaagacg
aaagcatactctaaagaagggctcggtctggcacagaaggtggacccagcccagagggag
aaggaggaggtcggcacgtggctaacgaatacgatagacactctgaacatgcaggtggac
cagtttgagagcgaagtggagtctctctcagtccagacgagaaaaaagaaaggagacaag
gagaagcaggaccggatcgaggagctgaagaaattcattgagaggcatcggtaccacatc
cggatgctggagacgatattgaggatgctggacaacgactctgtgcaggtggaagccatc
aggaagatcaaggatgacgtagagtactatatagactcgtcacaggatcccgactttgag
gagaacgaattcctttacgacgatctggatttggaggacattcctcagtcgctggtcgcc
acttcaccgccggggcactcgcacttggaggacgagatcttccagcagtccagcagcaca
cccacctccaccacctcatcttcacccatccccccgtcgcctgctacttgcactacagag
aactcagaagatgataagaagaggggacgttcgacagacagtgaagttagtcagtcgcct
gtgaagaatggaaatccctcctcttcgttatcctcttcttcttcctcctcctctgcttct
tcttccgtctcgggactgacctcatcttcaatggtctctatggtgaccatcgctggggga
ggaagcagtagctctgggggcaacagtcatcacagcaactcagcaggtcacctctccaac
acttccgctggcagctacagcaacgccacccagcagccgccgcacccgtcagcgcagcag
caacaggccaaaaactccgttagctcctcttcctcagctcccatctccaactccaacacc
tccaccaacagccaccctgcctcactggccgcctctccacccaatgccagcacacaggag
ctccgtgcttcaaattcacagccgcaggctccatcagggtccacgccaacctccaatagc
ctgggtcttagcctgggcctctctttggggaaagccatgccgggcgccgtcaccaccagc
cccatgtccggaggcctcggtctgtcggggatgccggcatccctgacgggcaccatggcg
ggccttctgtccagtaacacccctgcaccctacgctcaggcggtcggctccagcttaccg
ggctctttgggcggagtcagcacagcaacgaccaacagcgctgtaggctccatcggcagt
gggaacatgacagtcggcgggccgacatcctcgtcaggaggtctgctgggtgcagcgccg
ggtgcggttggctctgggattctgggtttgggctctagtcagtcaggggtgcagggctca
tccttggtgtcaccgagctcagtgggaggtttagctccaggtagcggagtaggagtcatc
gggagcaacggaggcagctcgggatcagcagggagtggagtagtaggaggaaactcgctc
cctgcccgaccaccgagccgacagaagcagaacggtagcactagttacagtgctgtggta
gcagacagcacaacagactccgccctcaacagtgccagccaatcgcaaagcagccaaccc
tcatctttgacctccatagccaatcagcctaaggacactgggcccagtctactaggctct
atgagtttgtcgtccagctctccatccccggccccttacagcgaggccaaaacagcgagc
ggcagcaacctgttgaatgggccaatgtcctactcacagcagtcctccgacagcatcaag
ccccaagagcctctgagcagcctcaagtccatggccgagcgagcagcaatgagctcaggg
atcgagggagatgtgacctccctgcacctcacctcagaaatattccccagcagcactacg
gccccttcaggccccccatcagcacctcagccctcgctgtcagaggtcagcatcccccca
tcgttgggggtgtgtccgctggggccggttcccctgtccaaagaccaggtctaccagcag
gccatgcaggagcaggcgtggacgcatatgccacacccatccgactccgagagaatcagg
cagtacctgatgaggaacccctgccccaccctgcctttccaccaccaggtgccaccgccc
cactcagacactgtagagttttaccagaggctttccacagagaccctcttcttcatcttt
tactacctggagggcactaaggcccagtatctggcagccaaagccctgaagaagcagtcg
tggaggttccacaccaagtacatgatgtggtttcagaggcacgaagaaccgaagaccatc
actgatgagtttgagcagggaacatacatttactttgactatgagaaatggggccagcgg
aagaaggagggcttcacgtttgagtaccggtacctcgaagaccgagacctccagtga
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