Oreochromis niloticus (Nile tilapia): 100710518
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Entry
100710518 CDS
T06104
Symbol
cnot3
Name
(RefSeq) CCR4-NOT transcription complex subunit 3 isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
onl
Oreochromis niloticus (Nile tilapia)
Pathway
onl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
onl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100710518 (cnot3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
onl03019
]
100710518 (cnot3)
Messenger RNA biogenesis [BR:
onl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
100710518 (cnot3)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
100710518 (cnot3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
100710518
NCBI-ProteinID:
XP_005472655
Ensembl:
ENSONIG00000006568
LinkDB
All DBs
Position
LG11:21995023..22008590
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AA seq
913 aa
AA seq
DB search
MADKRKLQGEIDRCLKKVAEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD
QIKTWVASNEIKDKRQLVENRKLIETQMERFKVVERETKTKAYSKEGLGLAQKVDPAQRE
KEETGQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKEKQDRIDELKRLIERHRFHI
RMLETILRMLDNDSVPVDAIQKIKDDVEYYIDSSQDPDFEENEFLYDDLDLEDIPAALVA
TSPSGQGNVEDEVYLHSSSTPTSTTSSSPIPPSPATCTAENSEDDKKRGRSTDSEVSQSP
VKNGTPSLLSSFSSSTTSGSSSSSSLVSMASVVGGIPAVPTSSSLIGSFSSAVQQHQHQP
AQQQQQNCQPPNQSQQQQQQPPQTKPSVPSNNTPSPPSNPLLPTSTAPSLPTPNTSTSSV
PNSQSQSTSGPTSASSLGLGLGLGLSKGGMTGTSSANQLPGLGMGGHPAPLNTMAGLISG
STPAPYAQAAASGGLGLSSTTQSSISAESSTSIPTSGSSGVTTNGAGTGLGLLGSSPAHN
SLSGNILGLVPGQSVPPGTSQVPPSSVSSTPGVVGMMGGNGGNVGVVGGVGVNSAPARPP
SGLKQNGSTSYSAVVAESSTESALSTPNQSQSSQPSSLSSSTSQPMDNGPSLISSITLPP
SSPSPSFSDSTPGGGSLLNGPHSFSQASEVLKAPEPLSTLKAMAERAALGSGLDGEISNL
HITDRGRNDIFSGSSAAPGTPAAPQPSVTEVNIPPSLGVCPLGPTPLPKDQLYQQAMQES
AWTHMPHPSDSERIRQYLMRNPCPTLPFHHQVPPHHSDSIEFYQRLSTETLFFIFYYLEG
TKAQYLSAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTYIYFDYEKWGQRKKEGF
TFEYRYLEDRDLQ
NT seq
2742 nt
NT seq
+upstream
nt +downstream
nt
atggctgacaagagaaaacttcaaggtgaaatcgatagatgtttgaaaaaagtagctgaa
ggtgtagaacagtttgaagatatctggcaaaagctccacaatgcagccaatgcaaatcag
aaggaaaaatatgaggctgacctcaagaaagagattaaaaaacttcagcgattgagagat
cagataaaaacatgggtggcctcaaacgagatcaaggacaaaaggcagctagtcgagaac
cgtaaacttatagaaacgcaaatggagcggttcaaagtggtggaacgtgaaacaaaaaca
aaagcctactctaaagaaggcttggggcttgctcagaaagtggatccagctcagagggaa
aaggaggaaacgggacagtggctaacaaatacaatagacactctaaatatgcaggtggat
cagtttgaaagtgaagtggaatctctttcagttcaaacaagaaagaagaagggtgataaa
gagaagcaagatcgtattgatgagctcaagcggttgattgagagacatcgattccacatt
cgaatgttggagaccattttacgaatgctggacaatgactccgtgccagtggatgcaatc
caaaagatcaaggatgatgttgaatattacattgactcctctcaagacccagactttgag
gaaaatgagttcctgtacgatgacttagacctggaggacatccctgcagcgttagttgca
acttctccatcgggccagggcaacgtggaagacgaggtgtatctccactctagtagcact
cccacttccaccacctcttcttcacccatccctccatccccagccacttgcactgctgag
aattcagaggacgataagaaaaggggacggtcgacagacagtgaagttagtcagtcacct
gtgaagaatggcaccccatccttgctatcatctttctcttcttccaccacctctgggtcc
tcctcatcctcctcccttgtgtccatggcgagtgttgtcggagggattcctgcagtgccc
acgagcagcagtcttataggaagcttcagcagtgcggtgcagcaacatcagcatcaacct
gcacaacagcagcagcagaattgtcagccgccaaaccagtcgcagcagcaacagcagcag
ccacctcagacgaaaccctcagtcccttcaaacaacacccccagcccacccagcaaccca
cttctcccaacgtctactgccccctctcttcctacacccaacacatccacttcatcagtt
cccaattctcagtcacagtccacatctggacccacatcggcatccagtttgggacttggg
ctgggcctgggattgagcaaaggtggcatgactgggacaagcagtgccaatcaattgcca
gggctagggatgggtggccaccccgctcctttaaacacaatggcagggctcatttcgggt
tcaacacctgctccttatgctcaggcagcagcatccggaggcttgggtttgagcagcacc
actcagtcaagcatttcagcagagagcagcacttccatacccacctctggctccagtgga
gtcaccaccaacggggcaggaacagggcttggtttgctgggttccagtccagcccacaac
tctctgagtgggaatattttgggtctggttcctgggcaaagtgtgccccctggtacctct
caggttcccccaagttctgtcagctctactccaggagtagttggcatgatgggaggcaac
ggaggaaacgttggtgtggttggaggagtaggagtgaattctgctcccgctagaccacca
agtggactgaagcaaaatggaagcacaagttacagtgctgtggtggcggagagttccaca
gaatcggctctaagcacaccgaaccagtcacaaagcagccaaccctcatctctcagttcc
tcaaccagtcagccgatggacaatggtcccagtttaatcagctccatcaccctgcctccc
agttctccgtccccctcgttctcagacagcacaccgggtggagggagtcttctcaacggg
ccccactccttttcacaggcctctgaagtgctaaaggcacctgagcctctcagcactctg
aaggcgatggcagagagagcagcgctgggatcaggcctggatggcgagatttccaacctg
catataacggacagaggtcgaaacgatatcttctctggttcatctgcagcacctggcaca
cctgccgcacctcagccgtccgtgacagaggtcaacatccccccatcgctcggtgtctgt
ccgctgggcccaacccctctccccaaagaccagctctaccagcaggcgatgcaggagtcg
gcatggacgcacatgccccacccctctgactctgagagaatcaggcaatacctgatgagg
aatccatgtcccaccttgcccttccatcatcaggtcccacctcatcactctgactccata
gagttctaccagagactgtccacagaaactctcttcttcatcttctattacctggagggt
accaaggctcagtatctgtctgccaaggctctgaagaaacagtcctggaggtttcacacc
aagtacatgatgtggttccagaggcacgaggagccgaagaccatcaccgatgagtttgaa
cagggcacttacatttactttgactacgagaaatggggccagagaaagaaggaggggttc
accttcgagtacaggtacctcgaagaccgagacctgcagtga
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