Oreochromis niloticus (Nile tilapia): 100711287
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Entry
100711287 CDS
T06104
Symbol
limch1
Name
(RefSeq) LIM and calponin homology domains-containing protein 1 isoform X3
KO
K24422
LIM and calponin homology domains-containing protein 1
Organism
onl
Oreochromis niloticus (Nile tilapia)
Brite
KEGG Orthology (KO) [BR:
onl00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
onl04990
]
100711287 (limch1)
Domain-containing proteins not elsewhere classified [BR:
onl04990
]
LIM domain-containing proteins
Other lim domain-containing proteins
100711287 (limch1)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4757
CH
LIM
DUF6215
Motif
Other DBs
NCBI-GeneID:
100711287
NCBI-ProteinID:
XP_005467280
Ensembl:
ENSONIG00000001371
LinkDB
All DBs
Position
LG2:11683813..11770382
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AA seq
1362 aa
AA seq
DB search
MASPVADIGQSHQHHPVNESAAQSAFLEAQKWIEAVTGRCFGDKDFRGGLENGILLCELL
SSIRPGLVKKINRLPTPIAGLDNLSVFLRGCEELGLKGSQLFDPGDLQDTSTRPTAKGSD
GSRKLKNVLITIYWLGRAANSCTSYNGPTLDLKEFEGLLSQMRKETEEAESPKRSIRDSG
YIDCWDSERSDSLSPPRHGREDSFDSLDSFGSRSRQTPSPDVLVARGSSDGRGSDSESDG
APHRKMPDVRKDDMLARRTSVSEPRTAVPFNQYLPNKSNQSGYLPTPLRKKSNDKEEGGR
KSWSTATSPVGGDRPLSLNEVCSLDIPPGESPSPPPTLPLKPCTQIQKENHIKKDKQEGR
QSASPPCIEIQTAGKRRRSEPLPSSLPQPQAEPPRETVIHLMVTSEQSTPARSCSEEFFH
QSSTLAANATAASVFRTSPINTAGKHSPVTHQEDVAMRKGVAGSLVAADAKGDDKQTCQM
PTSPKCIVALSPSSFLPVPTAMATASTETTDTCRQKGKPQTERDDPHEGTSWVDSSLPAK
SVSMIDMRGEEEAALQPHSQVRHERMHNQYNKMKEEDDHWQDDLARWKNRRRSISQDLIK
KEEERKMMERLMSGDTYTSQRRRSIKTYREIVEDKERREEELRQAYRKAKTPEEATAILQ
RYAQRFSISEAVLERLQLPKLLDRSISADPSFPTSPFPLSLSLSASPTTPDPFDSDFNGP
MRYLRQQSAPTPKFTSTFEARIEEFPKEPSSHQRSQIRSRSSEPPSTRALSPKPVPLLMP
KPYFQARPAGGETWNNKVDGLLRVNGDVGSDDVPTTPESQGRDSPPHFQASPSQSKNSTV
DGAVDAPSSETSLRQSTHASSREGSPVSTKAKETQDVTEIASEDTQEVQEEKVTESTPPS
RPTSLPSELQKPQESFGKTEDQTAAASEEEKPNAVAHQNPPAGEAQQEQEMPKPSSEDLS
NLVQSGVDKQSYQPANDPCSQELLQKSEMASSSAPPGSSGYHQQWETKAELANSVRSSLA
TSSPKLRWEFFAPQEEAEKDLRGNVSVPVLPQAKRGDRWSWDPDEERKRQERWQQEQERM
LQEKYQREQEKLKEEWEKAQKEVAEEERKYHEEERRILEETVTPLTPHSSALPSPSRGEL
SSISADPQDTIVRSLADWERKQELLERQSRESTESVDLKRRENDRTSDISTADDSMKTGR
SSMSQSSSQAEKFGHSLQNGQKLPPVLAKSSTPVKKQQELPADGSKPPGGRRSGPIDNNM
GRSSSKNPAACPPSSDALPPAPNRSVSGKKLCSSCGQPLGKGAAMIIETLSLYFHIHCFK
CGVCKGQLGDTTTGTDVRIRNGLLNCHQCYIRSRSAGQPTTL
NT seq
4089 nt
NT seq
+upstream
nt +downstream
nt
atggcaagtccggttgcagacataggacagtctcatcagcatcaccccgtgaacgagtcg
gccgcacagtccgcgtttctggaggcgcagaaatggatagaggctgtgacaggaagatgt
tttggtgacaaggatttcagaggaggtttggagaatggaatactactgtgcgagttgctg
agctcaattagacctggactggtgaagaaaatcaacagacttccaacaccaattgctggc
ctagacaacctcagtgtgtttttgcgtggctgtgaggagttaggactgaagggctcccag
ctctttgaccctggagacctgcaggacacatcaacacgccccacagccaagggaagtgac
ggcagtcgaaagctcaagaatgttttaattactatctactggttgggtcgtgctgccaat
agctgtacatcctacaacgggcccacgttggacctgaaagagtttgagggcctgctgtca
cagatgcgaaaggagacagaagaggcagagagccctaaacgcagcatccgggacagtggc
tacattgactgctgggactctgagcgcagcgactctctctctccgccacgccacgggcgc
gaggattcattcgacagcctggactccttcggatcacgctcaagacaaaccccgtcacca
gacgtcctggtcgcccgcggcagcagtgatggccgtggcagcgactcggagtctgacggc
gctcctcaccggaagatgccagacgttcgtaaggatgacatgttggcacgacggacgtct
gtcagcgagccacgaacggccgtaccctttaaccagtacctgcccaacaagagcaaccag
agtggatatctgccaacgccactacgcaaaaagagcaacgacaaagaggagggaggacgc
aagagctggagtactgccacttcacctgtagggggtgacagacctcttagtctaaatgag
gtctgtagcttagacatccctcctggagaatcccctagtccgccccccaccctgcctctt
aaaccctgtacacagattcaaaaggagaaccacattaaaaaggacaagcaggaagggagg
cagtctgcatctccgccttgcattgagatccaaacagcaggcaaaagaaggagaagtgag
cctctgcccagtagtctcccccagccccaagcagagcccccaagagagactgtaattcat
ctgatggtcacctctgaacaaagtactccagctcgctcgtgctcagaggaattcttccac
cagtcgtcgactctagcagcaaatgccacggccgcctccgtgtttcgaacgagccccatc
aacacagctgggaagcattcacctgtgacacaccaggaggatgtcgcaatgaggaaagga
gttgctggttctctggtagctgcagatgcaaaaggagatgataaacagacttgtcaaatg
ccgacctcacccaaatgtatcgtcgccctgagtccgtctagcttccttcctgtgcccact
gccatggcaaccgcatcaacagaaacgacggatacgtgccgacagaagggaaagccacag
actgaaagggatgatccacatgaaggcacgtcttgggtggacagcagtcttccagcaaag
agtgtgagtatgatcgacatgcgtggtgaggaagaagccgcgttacagccgcacagtcag
gtgcgtcatgagcggatgcataaccagtacaacaaaatgaaggaagaggacgaccactgg
caggatgacctggcccgatggaaaaatcggaggaggagtatttcccaggacctgatcaaa
aaggaggaggaaaggaagatgatggagcgcctgatgtcaggagacacctatacctctcag
aggagaagaagcatcaagacctatagggagatagtagaggacaaggagcgtcgtgaggag
gagctacggcaggcatataggaaagccaaaactcctgaggaggcgactgccattctccaa
cgttacgcccagcgtttctccataagcgaagcagtccttgaacgcctgcagctgccaaag
ttgttggaccgcagcatatccgctgacccctccttccccacctcacctttcccactctcc
ctctccctgtcagcctctcccacgacaccagaccctttcgattctgacttcaacgggccc
atgaggtatctgcgccagcagtctgccccaactccaaagtttacttctacatttgaggca
cgaatcgaggagtttcccaaagaaccgtcctcacaccagcggtctcagatacgctctcgt
tcctctgaaccgccatcaacccgagccctgtcacccaaaccggtgcctttgctgatgccc
aagccttatttccaggcccgacctgcaggaggtgaaacttggaacaacaaggtggatggt
ttgctgcgagtaaatggtgacgttggaagtgacgatgttcccaccacacctgagagtcaa
gggagggactcgcctcctcattttcaggcatccccttcccaaagcaaaaacagcactgta
gatggagctgtagatgctccctcgtcagaaacctcactccgtcagagtacccacgcctct
tctagggagggaagtccagtgtcaacaaaggcaaaggagacacaagatgttacagagata
gcttctgaggacactcaggaggtccaggaggagaaagtcactgagtcaacaccacccagc
cggcccacctcactcccatcagagctgcagaagccacaggaaagctttggaaagactgaa
gaccagacagcagctgcttcagaggaagaaaagccaaatgctgtagctcatcaaaaccca
cctgcaggtgaagcccagcaagaacaagaaatgcccaaaccatctagtgaagacctctct
aatcttgtccagtctggggttgataaacagtcatatcagccagccaatgatccctgttcc
caggagctcttacagaaatcagagatggcatcaagctcagctccaccaggatcatctggt
tatcaccagcaatgggaaacaaaagcagagcttgcaaacagtgtcaggtcttcgctggca
accagcagccctaaattacgctgggagttcttcgctccgcaagaagaggccgaaaaggat
ctccgtggaaatgtgtcagttccggtgttaccccaggccaagcggggagaccgctggtct
tgggacccggatgaggagcgaaagcgtcaggaaaggtggcagcaagagcaggagcgcatg
ctgcaggagaagtaccagcgtgagcaggagaaactgaaggaggagtgggagaaagcacag
aaggaggtggcagaggaggagaggaagtaccacgaggaggagcgtcggatactggaggaa
accgtgacgcctctgacgccccactcttccgccctgccctcccccagtcgaggtgaactc
tcctccatctcagctgatcctcaggacactatcgttcgttctctggctgactgggaacgt
aaacaggaactgctggagaggcagtcgagggagagcacagagagcgtggatctgaaacgg
agagaaaatgaccggactagtgacatcagcaccgctgatgacagcatgaaaacaggcaga
agctcaatgagtcagagcagcagtcaggcggagaaatttggtcacagcctacagaatggc
caaaagcttcctccagtgctggccaagtcttcaactccagtcaagaaacaacaagaactc
ccagcagacggcagcaaacctccaggaggacgaaggagtggccctattgataataacatg
ggccgcagctcatcaaaaaaccctgcagcatgcccaccatcctctgacgcactgcctcca
gcacccaacaggtctgtcagtgggaagaagctgtgttccagctgtggtcagccattaggg
aaaggggccgccatgatcatagagaccctcagcctctatttccacatccactgttttaag
tgtggagtgtgtaaaggacagttaggtgacacaaccacagggacggatgtccgaataaga
aacggcctcctcaactgccaccagtgctacatccgctcccgctctgccggacagccaacc
acattgtga
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