Oreochromis niloticus (Nile tilapia): 100711348
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Entry
100711348 CDS
T06104
Name
(RefSeq) spliceosome RNA helicase DDX39B isoform X2
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
onl
Oreochromis niloticus (Nile tilapia)
Pathway
onl03013
Nucleocytoplasmic transport
onl03015
mRNA surveillance pathway
onl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
onl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100711348
09122 Translation
03013 Nucleocytoplasmic transport
100711348
03015 mRNA surveillance pathway
100711348
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
onl03019
]
100711348
03041 Spliceosome [BR:
onl03041
]
100711348
Enzymes [BR:
onl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
100711348
Messenger RNA biogenesis [BR:
onl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
100711348
Spliceosome [BR:
onl03041
]
Complex C
Other components
EJC/TREX
100711348
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
100711348
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
AAA_19
Motif
Other DBs
NCBI-GeneID:
100711348
NCBI-ProteinID:
XP_005463661
Ensembl:
ENSONIG00000004740
UniProt:
A0A669D9C3
LinkDB
All DBs
Position
LG22:37868591..37894155
Genome browser
AA seq
432 aa
AA seq
DB search
MTENDVDNELLDYEDDEVEAGGAGDVGGASDVSIRKEGVKGSYVSIHSSGFRDFLLKPEL
LRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPITGQVSV
LVMCHTRELAFQISKEYERFSKYMPTVKVAVFFGGLPIKKDEEVLKKDSPHIVVGTPGRI
LALTRNKTLNLRHMKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIR
PVCRKFMQDPMEIFVDDETKLTLNGLQQYYVKLKDNEKNRKLFDLLDALEFNQVVIFVKS
VQRCVALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERV
NIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEGDARTLNDVQDRFEVNIGELPE
EIDISSYIESAR
NT seq
1299 nt
NT seq
+upstream
nt +downstream
nt
atgacagaaaacgacgtagataacgagctgttggactacgaggatgatgaggtggaggcc
ggaggggctggagatgttggaggtgcaagtgacgtgtcgataagaaaggagggggtgaag
ggctcttatgtgtccattcactcctctggattcagagactttctattgaaacctgaactg
ctgagagccatagtggattgtgggtttgaacatccgtctgaggttcagcatgaatgcatc
cctcaggcaatcctgggtatggatgtgctctgtcaggccaagtctgggatggggaagact
gcagtgtttgttcttgccaccctgcagcagctagagcccatcaccggacaggtctctgta
ctggtgatgtgccataccagagagctggcgtttcagatcagcaaggaatatgagagattt
tcaaagtacatgcccactgtcaaggtggcagtgttctttggagggctgcctataaagaag
gacgaagaggtgctgaagaaagactctcctcatattgtggtgggaacaccaggcagaatc
ctggcactgacgcgcaacaagacgctcaatttgcgtcacatgaaacatttcatcctggat
gagtgtgacaagatgctcgagcagcttgacatgcgccgagatgtccaagagattttccgt
atgactccccacgagaagcaggtcatgatgttcagcgccaccctgagtaaagagatccgt
ccagtctgcagaaagttcatgcaagatccgatggaaatctttgtagatgatgaaaccaag
ctaactctgaatgggctgcagcagtactacgtcaagctgaaggataatgagaaaaacaga
aagctctttgacctcctggacgcactagagttcaatcaggtggtgatctttgtgaagtcc
gtccaacggtgtgtagctctggctcagctgcttgtggagcagaactttccagcgattgcc
atccatcgagggatgcctcaggaggaacgtttgtctcgctaccagcagttcaaggacttc
cagaggcgaatcctggtggccaccaacctgtttggacgagggatggacattgagagagtc
aacattgccttcaattatgacatgccagaagactctgacacttaccttcacagggttgct
cgagcaggcaggtttggaacgaaaggcctggccatcacatttgtgtctgatgaaggtgac
gcccgcacgctcaacgatgtccaggaccgcttcgaggtgaacatcggcgagctgccagaa
gagatagacatctcctcgtacattgaatcagcacgataa
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