Oreochromis niloticus (Nile tilapia): 100711380
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Entry
100711380 CDS
T06104
Symbol
pabpc4
Name
(RefSeq) polyadenylate-binding protein 4
KO
K13126
polyadenylate-binding protein
Organism
onl
Oreochromis niloticus (Nile tilapia)
Pathway
onl03015
mRNA surveillance pathway
onl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
onl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100711380 (pabpc4)
09123 Folding, sorting and degradation
03018 RNA degradation
100711380 (pabpc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
onl03019
]
100711380 (pabpc4)
03041 Spliceosome [BR:
onl03041
]
100711380 (pabpc4)
Messenger RNA biogenesis [BR:
onl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
100711380 (pabpc4)
mRNA cycle factors
Stress granule specific factors
100711380 (pabpc4)
Spliceosome [BR:
onl03041
]
Complex C
Other components
Complex C specific factors
100711380 (pabpc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_7
RRM_occluded
RRM_10
RBD_RDR6
OB_RNB
POP1_C
ApbA_C
Motif
Other DBs
NCBI-GeneID:
100711380
NCBI-ProteinID:
XP_003446228
Ensembl:
ENSONIG00000008176
LinkDB
All DBs
Position
LG19:27569436..27579515
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AA seq
627 aa
AA seq
DB search
MNTATGSYPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFS
QPADAERALDTMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGAKAKEFTNVYIKNFGDDMDDERLKEIFDKYGKTLSVKVMTDPSGKSRGFGFVSYEK
HEDANKAVEEMNGTELNGKTVFVGRAQKKMERQAELKRKFEQLKQERISRYQGVNLYIKN
LDDTIDDEKLRKEFSPFGSITSAKVMLEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS
KPLYVALAQRKEERKAHLTNQYMQRIAGMRAMPANAIINQFQPTSGYFMPAVPQAQNRTT
YYAPNQLAQMRPNPRWQQQGGRSQGGFQAMPSSLRQPGPRANLRHMSPSSSTQGPRAGGQ
SMGPRPSVGVSGPRAMPPYKYATGVRNPNPQVVQPIALQQTQPAVHVQGQEPLTASMLAA
APPQEQKQMLGERLFPLIQAMHANLAGKITGMLLEIDNSELLHMLESHESLRSKVEEAVA
VLQAHQAKKDATQKVGGMAPTAAAATS
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
atgaacacagcgacggggagttatccgatggcttctctctacgttggcgacctgcacccc
gacatcacggaggctatgctgtacgagaaattcagcccagccggaccggtgctctccatt
cgggtctgccgagacatgatcacccggcggtccctgggatacgcttatgtgaacttctca
cagccggctgacgctgaaagagctctggacaccatgaattttgatgtggtgaaaggaaag
ccgatcagaatcatgtggtcccaaagagatccctccctcaggaagtcgggtgtgggcaat
gtttttatcaagaacctcgacaagtccattgacaacaaagccctgtatgacaccttctct
gcctttggcaacatcctttcctgcaaggtggtgtgtgatgaaaacggctccaagggttac
gcctttgtccattttgagacccaggacgcggctgatcgcgccatcgagaagatgaacggc
atgcttctgaatgaccgcaaggtgtttgtgggtcgtttcaaatctcgcaaagaacgggag
gctgaactcggtgccaaagctaaggagtttaccaacgtatacatcaagaactttggggac
gacatggatgatgaacgcctgaaggagatttttgacaaatacggtaaaacactcagtgtg
aaggtgatgacagaccccagcggcaaatccagagggtttggatttgttagttacgaaaaa
cacgaggacgccaacaaggctgtagaggagatgaatggcactgaactcaacggaaagact
gtgttcgtgggccgagctcagaagaaaatggagaggcaggcggagctgaagaggaagttt
gagcagctgaaacaagagaggattagtcgttatcagggagtcaatctttatattaaaaac
ttggatgacacaatagatgacgagaaactgcgcaaggagttctctccatttggctcaatt
acaagtgctaaggtgatgctagaagagggccggtccaagggctttggctttgtctgcttt
tcctcccctgaagaggctaccaaggctgtgactgaaatgaatggacgtattgttggctct
aaacctctctacgtggctcttgctcagcgcaaagaggagcgcaaagcccatctcaccaac
cagtacatgcagcgaatagctggcatgagggccatgccagctaatgccatcattaatcag
ttccagcccaccagtggatacttcatgccagctgtgccgcaggctcagaataggactacg
tactatgcacccaatcagctcgcccaaatgcgaccaaatccccgatggcagcaacaaggt
ggacgaagtcaagggggtttccaagcaatgcccagctcgctgcgtcagccagggccccgt
gccaacctcagacacatgagtcctagcagcagcacacaaggcccacgagctggtggtcag
agcatggggcctcgtccttcagtcggagtctccggccctcgggccatgcctccttacaaa
tacgccactggtgtccgtaaccccaacccccaggtggtgcaacctattgccttacagcag
actcagccagcggtgcacgttcagggccaagagcctctcacggcctccatgctggctgct
gcacctcctcaggagcagaaacagatgctgggggagcgtctgttcccactgattcaggcc
atgcatgccaacctggcaggaaagatcaccggcatgttgctggagatcgacaactctgaa
ttactacacatgcttgagtcccatgagtctctacgttcaaaggtggaagaagctgttgca
gttttacaggcacaccaggccaagaaagacgccacccagaaagtaggtggcatggctcct
actgctgctgctgccacatcctga
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integrated database retrieval system
