Oreochromis niloticus (Nile tilapia): 100712002
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Entry
100712002 CDS
T06104
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-2(V) chain
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
onl
Oreochromis niloticus (Nile tilapia)
Pathway
onl04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
onl00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
100712002
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
onl00536
]
100712002
Glycosaminoglycan binding proteins [BR:
onl00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100712002
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
TILa
Motif
Other DBs
NCBI-GeneID:
100712002
NCBI-ProteinID:
XP_005450538
LinkDB
All DBs
Position
LG16:complement(5918215..5960437)
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AA seq
1492 aa
AA seq
DB search
MEGFVLLRSSFFLLVSIAQVLIVSSQTSGDDMDCTADGQVYTNRDIWKPEPCRICVCDNG
QVLCDEIQCDDLSNCEKMYIPDGECCPVCRTDSSSSGGTGSFDGGRIYKGQKGEPGDVPV
VTGIRGRPGPMGPPGSPGERGPHGHKGRPGIRGPQGFDGEPGIPGQPGEPGPPGHPSHPG
GLGAQMAGVTDSKTGPMAMLSGSRGETGARGAPGPNGSPGQAGPQGPPGDVGDPGHMGPP
GQRGPEGPPGKPGEDGESGKAGNTGEVGFPGSAGPRGFPGTPGPPGLKGHRGHSGPLGPK
GETGAVGSKGATGPSGPLGAPGPMGPAGMPGERGRLGPGGIAGKRGPPGNIGKPGPMGPL
GLSGSPGYPGAPGMKGQPGPTGVRGPEGAQGQRGETGHLGRPGPIGIRGPMGTDGGPGSK
GPVGNVGPQGPGGHLGPHGPPGPQGSTGQPGIKGQLGDVGVPGFKGEAGPKGEPGPPGSQ
GVIGPQGEEGKRGPRGDPGSVGPPGPVGERGSPGNRGFPGADGLPGPKGSQGDRGISGPP
GPKGSLGDPGRTGEPGLPGARGLTGTPGVQGAEGKPGPLGASGEDGRPGPTGPIGNRGPA
GTMGVPGPKGFSGDPGKTGEQGSAGVPGQRGPPGKDGEVGPAGPPGPPGVAGDRGEQGPP
GENGFPGLPGNQGPPGESGKPGDQGIPGELGPVGQIGPRGERGIPGERGELGPTGLQGPK
GIPGAPGPDGPKGSPGPTGALGDVGPPGLQGMPGERGISGPSGPKGERGAIGEKGSEGTA
GNDGARGAPGPTGPSGPAGPSGEKGEPGPKGPSGPPGSRGTPGSRGDPGPIGAVGFSGPP
GPDGQPGVKGEPGEQGQKGDAGSPGPQGLAGAHGPPGPVGVAGLKGGRGTQGAPGPTGFP
GSAGRVGPPGPPGPLGEAGPLGPPGKEGPPGLRGDHGPPGRQGERGPPGSPGSPGDKGDS
GEDGPTGPNGPPGPAGTTGQRGAVGLHGQRGERGPPGLPGPAGPPGKQGSTGAPGDKGPP
GPVGVPGANGPRGDPGPDGPAGSDGPPGKDGVIGQRGDRGDPGPEGLVGPQGLPGPPGPV
GAPGDAGKRGEPGSRGPPGPPGSAGKRGLVGPQGPRGDKGDLGDHGERGQKGHRGFTGLQ
GLPGPPGTTGEQGAPGIVGPSGPRGPPGPIGPPGKEGYIGLPGPMGPPGTRGITGEVGPE
GPPGEPGXPGPPGPPGRPMAAVDDLFGGPQDYDSGPPPPEFSEDEALPNSNASTIVPVDP
GVQATLKALKSQIDNMKSPDGSKKHPARTCDDLKRCYPMKKSGEYWVDPNQGSAEDAIQV
YCNMDTGETCISANPSSIPRKVWWTSSRNKPVWFGADMNSGTHFAYGNKDQPSNTVAVQM
TFIRLLSKEVSQTITYHCKNSVGYMDDKTGNLKKAVILKGSNDLELKAEGNNRFRYTVVE
DSCTQANGNWGKTVFEYRTQKTARLPIVDIAPVDIGGRDQEFGVDIGSVCFL
NT seq
4479 nt
NT seq
+upstream
nt +downstream
nt
atggagggctttgtgcttttaaggagttcgttttttctgttggtctctattgctcaggtt
ttgattgtttcatctcagaccagcggagatgacatggactgcacggcagacggccaggtg
tacacaaacagggacatctggaagccagagccatgccggatctgtgtttgtgacaatggg
caggtcctgtgcgatgaaatccagtgtgacgatctgagtaactgtgagaagatgtacatc
ccagatggcgagtgctgccccgtgtgtcggactgactcatcaagcagcggtgggacgggg
agttttgatgggggtagaatttacaagggtcagaagggagaacctggagatgttccagtt
gtgactggtatcagaggccgccctggacctatgggacctcccggctcaccaggagaaaga
ggaccacacggacacaaaggaaggcctggaatacggggcccccagggctttgacggagag
cctggcataccaggtcagcctggagaaccaggacctcctggacatccatcacacccaggg
ggcctgggagcccagatggctggagtgactgactcaaaaacaggacccatggccatgttg
agtggctccaggggagagaccggagcaagaggagctcctggtccaaatggatcacctggt
caagctggaccacaaggacctcctggagatgttggtgatcctggacatatgggtccaccg
gggcagagaggacctgagggccctccggggaagccaggtgaagatggagaatcaggcaaa
gcaggaaatactggagaagttggattccctggatcagcagggcctagaggatttcctggg
acacctgggcctccaggcctgaagggtcacagaggccatagtggacctcttggaccaaaa
ggtgaaactggagctgttggatccaagggtgccacagggcccagtggtccattgggagca
cctggacctatgggtcctgcagggatgccgggtgagagaggacgccttggaccaggtggt
atagcgggtaagcgtggtcctcctggtaatatcgggaaacctggtccgatgggccccttg
ggtctcagtggctcacctggatatccaggggccccaggaatgaaggggcagcctggtccc
actggtgttcgaggtccagagggagcacaaggacagagaggagagaccggtcatctgggc
agacctggccccattggcatcagggggcccatgggaacagatggaggcccaggttccaaa
ggaccagtgggtaatgttggtccacaaggtccaggcggccatcttgggccccatggccca
ccaggacctcagggaagcactggtcaacctggaatcaaaggacaactgggagatgttggt
gttccgggatttaaaggagaagctggacctaaaggggaaccgggtccgcctggttcccag
ggagtgatcggacctcaaggtgaggagggaaagcgaggaccacgtggagatcccggctct
gttgggcctcctggtcccgtcggtgaaagaggatcccctggaaacagaggattccctggt
gcagatgggctgccgggaccaaagggttctcaaggagatcgtggaatatcaggcccacca
ggaccgaaaggttctctaggagacccaggacgcacaggagaacctggtctaccaggtgca
aggggtcttactgggacccccggagttcaaggtgcagagggaaaaccaggaccactgggt
gcctcaggtgaagatggtcgtcccggtcctacagggcccattggaaacagagggcctgca
ggaaccatgggagtcccaggccccaagggcttcagtggtgacccaggaaagacgggggaa
cagggatctgcaggagtgccaggtcaaagaggtcctccaggaaaagatggagaggttgga
cctgcaggaccccctggtccacctggtgttgcaggagacagaggagagcagggacctcca
ggtgaaaatggcttcccgggtttgcctggaaatcaagggcctcctggagagtctgggaaa
ccaggtgaccaaggtattcctggagaacttggtcctgtgggtcagattggaccgagggga
gagcgtggaattcctggggagagaggagaactgggtccaactggtctgcagggacctaaa
ggaattcctggtgcacctggtccagatgggccaaagggtagccctggtcccaccggtgct
ttaggtgatgtgggtcctccaggtcttcagggaatgccaggagagaggggcatctctggt
ccttctggtcccaaaggtgaaagaggagcaattggtgagaaaggatctgaaggtacagct
ggaaatgatggcgcaagaggagcaccaggtcccactggaccatcaggacctgcaggaccc
agtggtgagaagggagaacctggacccaaaggaccatctggaccaccaggatccagagga
acacctggatcaagaggggaccctggtcctattggtgctgttggattttctggcccccct
ggtcctgatggccaacctggagtaaaaggagagcctggagagcaaggccaaaaaggagat
gcggggtctcctgggccacagggcttggctggtgcccatggacctcctgggccagttggt
gttgctggcctgaaaggaggaagaggaacacagggagcaccgggccccactggtttccca
ggctctgcaggaagggttggaccccctggcccacctggtcctttaggagaagcgggaccc
ttgggacctccaggaaaagagggtcctcctggacttcgtggagatcatggaccacctgga
cgacaaggagaacgtggacctccaggatcaccaggtagcccaggagacaaaggggactct
ggagaggatggccctacgggtcctaatggtcctccaggcccagctggaactacagggcag
agaggcgctgtgggtcttcatggtcagagaggagagcgtgggccaccaggtctcccagga
ccagcgggtcccccaggaaagcagggctcaacaggagcacctggagataaaggccctcca
ggtccagtcggtgttcccggtgctaatggacctcgtggtgatcctggtcctgatggtcct
gcaggatcagacggcccaccaggaaaggatggtgttattggacagaggggagaccgaggg
gatcctggtccagaaggcttggttggtcctcagggacttcctggacctcctggtccagtt
ggtgccccaggtgatgctggaaagagaggagagcctggctcgagaggacctcctggacca
cctggctcagctggaaagagaggattagtgggaccccaagggccaagaggagataagggt
gacctgggtgatcatggagagagaggccagaaaggacacagaggcttcactggtttgcag
ggtctccccggacctccaggcacaactggtgagcagggagctccaggaattgttggaccc
agtggaccaaggggacctcctggacctatcgggcctcctggaaaggaaggatacatagga
ctgcctggaccaatgggacctccaggaactcgtggcatcacaggagaagttggaccagag
ggccctccgggagaacccgganccccaggtcctccaggccctccaggacgtcccatggcg
gctgtggatgacctattcggcggcccccaggattacgactctgggccacctcctcctgag
ttcagtgaggacgaggctctgcccaacagcaatgcttccaccatagtgcccgtggacccc
ggtgttcaagccacactgaaagccctcaagagccagatcgacaacatgaagagcccagac
ggcagcaagaaacatcctgccaggacctgcgacgacctcaagaggtgctaccccatgaag
aagagcggtgagtactgggtggatccaaaccaaggtagtgcagaggatgccattcaagtg
tactgcaacatggacactggagagacctgcatctctgccaacccatccagcatacctcgt
aaagtgtggtggacctcctccaggaacaagcctgtgtggtttggagccgacatgaacagc
ggaacacattttgcttatggcaacaaagatcagccatcaaacaccgtcgcagtgcagatg
accttcatccgcctgctgtccaaagaggtttcccagaccatcacgtaccactgcaagaac
tctgtgggctacatggatgacaagacgggcaacttaaagaaagctgtgatcctcaaaggc
tccaatgacctagaactcaaagcagagggaaacaaccggttcagatacacagtggtggag
gactcctgcacacaagcaaatggcaactggggcaagaccgtgtttgagtataggacacag
aaaacagcaagacttcccattgtggatattgcccccgtggacattggtggccgggatcaa
gagttcggcgtcgacatcgggtccgtgtgcttcttgtaa
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