Oreochromis niloticus (Nile tilapia): 100712452
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Entry
100712452 CDS
T06104
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
onl
Oreochromis niloticus (Nile tilapia)
Pathway
onl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
onl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100712452
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
onl03041
]
100712452
03009 Ribosome biogenesis [BR:
onl03009
]
100712452
Enzymes [BR:
onl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
100712452
Spliceosome [BR:
onl03041
]
Complex A
U1 snRNP components
U1 related factors
100712452
Complex B
100712452
Ribosome biogenesis [BR:
onl03009
]
Eukaryotic type
Pre-60S particles
Helicases
100712452
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
100712452
NCBI-ProteinID:
XP_003443141
Ensembl:
ENSONIG00000008283
UniProt:
I3JNH8
LinkDB
All DBs
Position
LG4:8951248..8956641
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AA seq
628 aa
AA seq
DB search
MPGYSDRDRGRDRDRDRGYGGGPPRFGGSRGGGGGGGKFGNPGDRLRKKHWNLDELPKFE
KNFYQQHPDVARRSHPEVEQYRRSKTITVKGRDCPNPIMKFHEASFPSYVMDVINKQNWT
EPTPIQAQGWPLALSGMDMVGIAQTGSGKTLAYLLPAIVHINHQPFLERGDGPICLVLAP
TRELAQQVQQVAAEYGRASRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEAG
KTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLK
EYVQINIGALQLSANHNILQIVDVCNDGEKENKLIRLLEEIMSEKENKTIIFVETKRRCD
DLTRRMRRDGWPAMGIHGDKSQQERDWVLNEFKYGKAPILIATDVASRGLDVEDVKFVIN
FDYPNNSEDYIHRIGRTARSQKTGTAYTFFTPNNMRQASDLVSVLREANQAINPKLLQMA
EDRGGRSRGGRGGDYRDNHRDRYSSGRRDFGNFRDRDNRGFDNGPAKSYGMSSQNGGYGG
NSGNSNGFNGGSYNGNGQSNFSSNQNGSFGAQNNFQGQQFGAGKAVAQNGVSHPPFPFPQ
GQAPPPPQQQQHPPPPLVPYPMPPQFSQ
NT seq
1887 nt
NT seq
+upstream
nt +downstream
nt
atgcctggatattccgacagagatcgtggcagagacagggatagagatagaggttatggc
ggggggcctcctcgttttggtggaagccgtggtggtggtggaggtggaggaaagtttggc
aatcccggtgaccggctgcggaagaaacactggaacctggacgagctccctaagtttgag
aagaacttctatcagcagcatcccgatgttgcccggaggtctcatccagaggttgaacag
tacaggagatccaaaacaattacagtgaaggggagggattgcccaaatcctatcatgaag
tttcatgaagcaagctttccctcgtatgtgatggatgtcatcaacaaacagaactggact
gaacctacacccatccaggctcagggctggcctctggctcttagtggcatggacatggtt
ggcattgctcagactggttctggcaaaactcttgcttatctgctgcctgcgatcgttcac
atcaaccaccagcctttcttggaacgtggagacggtccaatttgtttagtgctcgccccg
acccgagagctggcacaacaggtgcaacaggtggccgctgaatatggtagagcttctcgt
ctaaagtccacctgcatctatggtggtgcacctaaaggaccccagattcgtgacctggaa
agaggtgtggagatctgcattgccactccaggcagactcatcgacttcctggaggcagga
aagaccaacctccgcagatgcacgtaccttgtgcttgatgaggccgacagaatgctggac
atgggctttgagccacagattcggaaaatcgttgaccaaatcaggcctgaccggcagact
ctgatgtggagtgccacttggcccaaagaagttcgccagctggctgaagatttcttgaag
gaatatgttcagatcaatattggggcactgcagctcagtgcaaaccataacatcctgcag
atagtggatgtgtgcaatgatggcgagaaggagaacaagctcattcgtctgcttgaggaa
ataatgagtgaaaaggagaacaagaccatcatctttgtagagactaagaggcggtgtgac
gaccttacaaggaggatgagaagggatgggtggcctgctatgggaatccatggagataaa
agccagcaggagcgagactgggtgctcaatgaattcaaatatgggaaggcgccaattctc
attgccacagatgttgcatccaggggtttagatgttgaagacgtcaaatttgtcatcaac
tttgactaccccaacaactccgaggactatatccaccgcattggcagaacggctcgtagc
caaaagacaggcacagcctataccttcttcacaccaaacaacatgaggcaagccagcgac
ctcgtctctgtgcttcgagaggccaaccaggctatcaacccaaagctcctccaaatggca
gaagacagaggaggtcgttcaaggggaggcagaggtggtgactatagagataatcatcga
gataggtattcctcaggaaggcgtgattttggcaattttagggacagggacaacagaggc
tttgataatggaccagctaagtcttatggcatgagttctcagaatggaggctatgggggc
aacagcggcaacagcaatggcttcaatggaggaagctacaatggtaacggacagtcaaac
tttagtagcaaccaaaatgggtcattcggagcccagaacaacttccagggccagcagttt
ggtgctggtaaggctgttgcgcagaatggtgtgagtcatcccccattccccttcccccag
ggacaggctccaccgccgccgcagcaacagcagcatcctccaccaccactggtgccgtac
cccatgcctcctcagttctcacagtaa
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