Oreochromis niloticus (Nile tilapia): 102082414
Help
Entry
102082414 CDS
T06104
Symbol
col7a1
Name
(RefSeq) collagen alpha-1(VII) chain isoform X2
KO
K16628
collagen type VII alpha
Organism
onl
Oreochromis niloticus (Nile tilapia)
Pathway
onl04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
onl00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
102082414 (col7a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
VWA
fn3
VWA_2
Kunitz_BPTI
Pur_ac_phosph_N
Motif
Other DBs
NCBI-GeneID:
102082414
NCBI-ProteinID:
XP_013124693
LinkDB
All DBs
Position
LG5:22657798..22723482
Genome browser
AA seq
3086 aa
AA seq
DB search
MWSWVFTLTVLLCSVKHAEAQDRCDNVQAADIVFLVDGSSSIGRPNFLQVKGFMAGIVKP
FASSVGESGVRFGVVQYSDTSRVEFTLTAYLNGTELVNAVQNINYKGGNTRTGAGLKFAS
DNFFNPASVRDVPKIMILITDGKSQDNVNEPAQKLRSQGVHVFAVGVKSADKNELAQISS
QPSSDFTFFVGDFKLLNTLLPLVNSQVCSKAGGDYASDEAFVGPSNLQFTGQTSDSLRFR
WSPAGGPVSAYVIQHVPLTGLGQPVIAEMRQDSVTANQRTYTARGLRSGTDYLVTVIAQY
PNSVGDSVSAKQRTRSLPGVSSLRLVQAGFFSLSLGWNQPSTPVQGYRITYGPRGQPAAQ
LLERSLSAGSTSVTLESLQPDTEYVISLYPLFPRNSASPSVLNARTLSLEVVQQLSVETE
SEGSVRVRWRGVSGARAYRLVWGPFTGRDVETVEVGGDVDFYTLSGVQPDTEYIVTIIPL
YEGNTEASPTTARFKIERQEQQVLRAAITSPSSIRLTWRLIQSSRGYRLEWREGEGGPVR
SLSFPRSTTNSVLTGLKPNTEYIFTLYTLFEGREEATPVSTTSREEQPVGRVSNLRVVES
LGRTVRLGWTGVAGATQYRVIILNTDLQAEEIRLIPGNQTTLDLRDLIVGVSYGVSVTAL
VGENEGEPVTVNIKPELVVGRVTNLRVINANSRRIRITWTGVTGATGYRVTWRQGNSAEQ
SRTLGAEVTAFTIEGLQPDEALIIGVAAVADQRVGEVATLATRTNPQSGLLSGLRVLDIT
SQRIRIAWSLSSRATGYKITWRRDDGVETSRNVDASVSTYTIDGLRPDSAYTVQVSTLTG
SREGTPAVLNVKTEQDQSTVGTVTSLQVQEGRGEVVRITWVGVQGATSYRVSWRRTDGGE
ERSQLVPGDVTAVDLDQLDPGVQYEVQVMALVQNREGAPVSVSITTPGDYTPPSLPTTTL
RVVEVTRDSVRLGWSLLQGATGYILRWREESDSGRVLSVTLPASSSSYEVPSLRLGVRYR
FSLQPNFASGLGGESSVDGRPVCALGPLDVVFLVPASTDRINLARPLREFLTNTAESLRT
TGALNTQIGVVVYGSRPKIWFLLNRHARSDTLLQEIQSIPFDESPGSNIGEAVTFTRQYV
LTPSAGRRLRVPGVVVIIADKRSNDDLSLAASSLKATGVKVLAVGVDQADTGELYQAVSD
GNDNLLYTSYPAQLTTLQSNLASLLCGIARAQETTQSTDECTIQCPRGEKGERGEKGERG
RDGADGRKGEPGRDGLPGRDGARGPEGRPGTPGQSLPIDPSLVVKGEKGERGFPGIDGNP
GLPGRPGAPGSAGVPGSQGLPGVRGNPGEPGTPGPLGPKGDKGERGEPGPVTSGGGGLPG
RKGEPGIPGTDGTPGRSGRDGTKGEPGVPGTRGQDGRPGIPGTPGLSVKGDKGSPGERGP
PGVGSGVAVKGEKGSPGIPGLQGPQGPSGPAGLEGRKGEKGDSGEGQPGPPGKNGEPGDR
GPRGPPGEIGSKGDRGQAGEPGSQGDRGERGPAGETGERGDSGKPGPPGPAGVRGLPGPS
GPPGEKGNEGARGEPGRTVQGLSGRKGEQGERGIPGPEGSRGEKGEPGQRGEKGSPGSGG
SGVAGPKGEPGERGPAGISGRPGAKGDPGEPGERGENGRPGFPGKPGVPGKQGERGEKGD
EGTPGESGLPGKPGERGLRGQTGQPGSPGEKGDMGDPGESGRNGSPGPSGPRGEKGEQGL
QGPPGPPGVVADIQGQLKGERGEKGDAGDPGEHGSKGTKGEAGTPGAPGLRGPEGQRGPP
GTRGDTGDRGPPGEKGERGASGLDGRPGLDGKPGAPGPPGQRGDPGKQGDPGRDGLPGLV
GAQGPPGPVGPAGNPGIPGKAGENGKVGPPGKTGEDGVPGEDGRKGDKGEAGAAGRDGRD
GEKGDRGPSGPVGSPGSPGAPGLPGSIGPPGQVVYVKGAEATPIAGPQGPPGAPGVPGIP
GAAGTRGERGLPGLKGEPGDPGEDGAPGKPGTSVDVQKALAGFGIQVSDLKVVVDSKDTL
SLLKVLKTEKGEKGDKGEPGQRGPSGADGARGFPGERGSKGDAGDRGPVGPAGPPGRAIV
ERGPEGPSGPAGEPGKPGIPGLPGRAGELGEAGRPGDKGERGEKGDRGDSGRDGLTGPAG
PPGQKGESADSVLVGSPGARGPPGVSGLKGEPGATGPSGPKGDRGFVGPRGDKGERGEPG
EKGRDGSQGTQGEPGKPGQDGKPGFPGFPGVLGRPGNPGEPGIRGQTGPTGPTGLPGPPG
VKGNQGEAGVGVQGPPGAQGSTGLPGPAGPPGAVGPQGPPGLPGQVGEAGKPGVPGRDGV
PGKEGIPGLPGKQGIAGPPGLAGLKGEQGDSGPPGKAVAGPPGPKGERGPPGLMLPGTAG
ERGPTGEKGNKGDKGVAGIKGERGQAGESGEPGEDGAQGSPGPKGDKGEKGIGLAGPPGR
IGPPGLKGDPGMPGPAGPPGPAGKTGDSGPPGVRGENGQPGPPGPPGERGLQGFAGRAGN
VGPPGPPGPPGLAGSPGTNGVKGDKGETGVGVPGARGERGDPGPRGEEGRAGLDGERGPS
GPPGNRGARGEKGDSGPQGDKGEKGDTVLVGGPPGEKGNKGETGDRGPKGIQGEKGVKGQ
EGPPGEVGLRGEPGERGSTGFPGARGPGGQKGEAGQPGVPGESGLPGKDGLPGRKGEQGE
TGNVGIRGVKGDRGPKGICGGDGPKGEKGNAGINGRSGLPGRKGEQGDIGPSGAPGIPGK
EGLVGPKGDRGFDGIAGPKGAQGEKGERGLPGVPGPPGPRGADGAPGLTGPQGPAGTKGP
EGLQGQKGERGPIGPATVGPRGIPGIPGERGEPGDMGPDGAKGDRGEAGMTEEEVREYVR
SEMSQHCACGGSGPNLRYPPVRALPTPEQQLALKGEEGRELHMVVNTNDPDYEHVYSVES
YDDPLEEMLYFTSPSANQSDGEVDRKKSEKTVRVEPNKSASADDQATADGQEAVKVTHLK
AVKSRTVRSKRRVKGEAPADPCLLPMDEGSCGKYTMRWYFNRQAQACRPFIYSGCEGNDN
RFLYLEECEETCLGEADGSPPFKTAR
NT seq
9261 nt
NT seq
+upstream
nt +downstream
nt
atgtggagttgggttttcactttaactgtgctgctgtgctctgtgaaacacgctgaagct
caggacaggtgtgataatgtacaagctgcagatatagttttcctggttgatggctcttcc
agtattggccgacctaacttcctgcaggttaagggctttatggctggaattgtaaagcca
ttcgccagctccgtgggcgagtcgggggttcggttcggtgttgtacagtacagtgacacc
tcgagagtcgagttcaccttgactgcctacctgaatggcactgagcttgtcaacgctgtc
cagaatataaactataaaggtggaaacacacgcactggtgccggccttaagtttgcctct
gataacttcttcaaccccgcctctgttcgggatgttccaaagatcatgatcctgatcaca
gacgggaagtcgcaggacaatgtgaacgagccagcacagaagctgcgcagtcagggagtt
catgtttttgcagttggtgtaaagagtgcagacaagaatgaactggctcagatctcgtcc
caacccagcagtgattttaccttctttgttggggacttcaaactgctgaacacgctgctt
cctcttgtgaactctcaagtttgctcgaaagcaggaggcgattatgctagcgatgaggcg
tttgttggtccatccaacctgcagttcacaggccagacgtctgactctctcaggttccga
tggagtcctgcagggggccctgtgagtgcctatgtgatccagcacgtgccactcactggc
ctgggtcaaccagtcatagcagaaatgcgtcaggatagtgtcactgccaatcagaggacc
tacactgcacgaggtttaaggtcaggaacagattacctggtgactgtcatcgcccagtac
cccaacagtgtgggagactctgtttctgccaagcaacggaccaggtcattgccaggtgtc
tccagtctgcgcttggtccaagcaggtttcttttctctcagtctgggctggaatcaacct
tcaactcctgtccagggctacagaatcacctacggaccacgaggtcagccagcagctcag
ctgttggagcggtcactgtctgcaggctccacatctgtcaccttggagtcacttcagccc
gacacagagtacgtcatcagcctctaccccttgttcccacgaaactctgcatccccgtct
gtcctcaacgcccgcacattgagccttgaggttgtgcagcagttatcagtggagacggag
tcagagggcagtgttcgtgtgcgatggcgaggtgtcagcggtgcgagggcgtaccgtctg
gtctggggaccgtttacaggtcgtgatgtagagaccgtggaggtcggtggtgacgttgac
ttctacacgctgtctggggtccagccagatactgagtacattgttactattatcccacta
tacgagggaaacacagaggcctctccaacaacggccagattcaagatagagcgtcaagag
cagcaggtcctcagagcagctatcaccagtccctcctctatccgcctcacctggagactc
attcagtcctctcgagggtatcggctggagtggagggagggggaaggaggccctgtccgg
agcctgtcctttccaagaagcaccaccaactctgtgctcacaggcctgaaaccaaacaca
gaatatatcttcaccttgtacaccctgttcgaaggtcgtgaggaagccacacctgtctcc
accacatccagagaggaacagccagtgggaagggtttccaacctgcgagtggtggagtct
ctgggcaggactgtcagacttggctggaccggtgtagccggggccacacaatacagagtt
atcatcttgaacactgacttgcaagcagaagaaatacgactcattcctggaaaccagacg
acccttgacctcagagacctgatagtgggggtctcgtatggtgtcagtgtcactgcactg
gtgggagaaaacgaaggagagccggtgaccgtcaatatcaaaccagagcttgttgtggga
agggtgactaatctgagagtaataaatgcaaatagtcggagaattcgaattacctggaca
ggtgttaccggagcaacggggtacagggttacttggagacaaggcaacagtgcagaacaa
tcccgtactctgggagccgaggtcacggccttcaccatagaaggcctgcagccagatgag
gcactaataattggtgttgcagctgttgctgatcagcgtgttggagaggtggccacgctg
gctactcggaccaatccccaaagtgggttattgtctggacttcgtgtccttgacatcacg
tctcagagaatacgcatcgcgtggtcactttcctcgagggcaactgggtataagatcacg
tggcgccgtgatgatggagtcgaaactagtcgtaacgttgatgccagtgtttctacctac
actatcgatggactgcggccagattcggcttacacagtgcaggtttctacactgactgga
tctcgagaagggactcctgcagttctaaatgtcaaaacagaacaagatcagtccacggtt
gggactgtgacatcactgcaagtccaggagggccgcggagaggttgtccgaatcacttgg
gttggcgtgcagggagcaacatcttaccgtgtgtcttggaggagaacagatggtggtgaa
gagaggagtcagctggtacctggagatgtgacagcagtggatttagaccagctggaccct
ggagttcagtatgaggtgcaggtcatggctttagtccaaaacagagagggagccccggta
tctgtcagcattaccacacctggtgattataccccgccttcattgcctaccacaacttta
cgagtggtagaggttacccgggattctgtgcggctgggctggagtcttttacaaggtgcc
accggatatattcttcgttggagagaagaatcagatagtggtcgagtcttgtctgtcacg
ctgcctgcttcatctagctcttacgaggtgcccagcctgcgtttgggcgttcgatatcga
tttagcctgcagcccaactttgcaagtggactaggaggagaaagctctgtagatggacgc
cctgtgtgtgcgcttgggcctctagatgtggtgtttctggtacctgcgtctactgatcgt
attaatcttgcaagacctttacgtgaattcctcacaaatacagcagagtctctcagaact
actggagccctcaacacacagattggggttgtagtatatggttctagacccaaaatatgg
ttcctgctcaatcgccatgccagatctgataccctacttcaagagattcagtccataccc
tttgatgaaagcccagggagcaacatcggtgaggcggtaacattcaccagacagtatgtc
ctgaccccatcggctggacggagactaagggtccctggtgttgttgtcatcatcgctgac
aaacgttccaatgacgacctgagccttgcagccagcagtctcaaagctacaggtgtgaaa
gtcctagctgttggtgtcgaccaggcagacactggggagctgtatcaggctgtgtcagat
ggcaacgacaacctcttgtatacaagttatccagcgcagctgaccacgctacagtctaat
ctagccagcttgctctgtggcattgccagggcacaagagactactcaaagtacagatgag
tgtaccattcagtgccctcggggtgagaagggagaacgtggagaaaagggtgagagaggc
agagatggtgcagatggacgcaagggagagcctggtcgtgatggtttgcctgggagagat
ggcgccagaggccctgaaggtcgtccaggaacaccaggccaaagtctcccaattgaccct
tcgctggtggtaaaaggagaaaagggagagcgaggttttcccggtattgatggaaatcca
gggttaccagggcgaccaggtgcccccggaagtgcaggtgttcccggttcacaaggctta
cctggtgtcagaggaaacccaggtgaaccaggaacaccaggaccactggggccaaagggt
gataaaggtgaaaggggtgaaccaggtcctgtgacatctggtggtgggggtcttccaggg
aggaaaggagaaccaggcattccaggaacagatggtacgccaggtcggtcaggcagggac
ggcaccaaaggagaacctggagttccagggacacgaggccaggatggtcgcccaggaata
ccaggaacaccagggctttcagtcaagggagacaagggaagcccaggagagaggggacct
ccaggtgtaggcagcggggtggcagtgaaaggcgagaagggctcccctggtattccagga
cttcagggacctcagggtccttcaggaccagcaggacttgagggcagaaaaggggagaag
ggtgacagtggcgaaggacaacctggacctccaggcaaaaatggggaacctggggacagg
gggccccgtgggcctccaggagaaattggcagcaagggggacagaggacaagcaggtgag
cctggatcacagggagataggggggagagaggaccagctggtgaaactggagaaagagga
gattcagggaagccaggccctccaggacctgcaggtgtaagaggtttaccaggacccagt
ggaccgccaggagaaaagggaaatgaaggtgcacgaggagagcctgggagaactgttcaa
ggtctctcagggaggaaaggagaacagggggagcgaggcatacctggccctgagggttcg
agaggagaaaagggagaaccaggacagagaggagagaaagggtctccgggctctggaggg
tcaggtgttgcaggacctaagggagagccgggagagcgagggcccgctggtattagcgga
aggccaggtgccaagggagatccaggtgaaccgggagagaggggagaaaatggacgccca
ggattcccaggaaagccaggcgttcccggtaaacagggggagagaggagagaagggtgat
gaaggcactcctggtgagtctggacttccagggaagccaggagaaagaggactgaggggt
cagactggtcagccagggtcaccaggcgagaaaggagacatgggagaccctggagagagt
ggacgaaatggtagccctggaccgtctggaccacgaggagagaagggagaacagggactt
caagggcccccaggaccaccaggagtagtggctgatatccagggccagctgaaaggagag
agaggagaaaagggtgatgctggtgacccaggagagcatggcagcaaaggcacgaaaggc
gaggcggggactcctggagctccaggcctaagaggtcctgaaggacaacgggggcctcca
gggacaagaggcgacacaggagacagaggaccgcctggagagaagggagaacggggagca
tctggcttagatgggcgtcctggtctggatggtaaaccaggggctcctgggccacctggc
cagaggggtgatcctgggaaacagggagatccagggagggatggattacctggactagta
ggggcgcagggtcccccagggcctgttggacctgcaggcaatccagggatacctggtaaa
gcaggtgaaaatggcaaagttggaccacctggcaaaacgggcgaggatggcgtgccaggt
gaagatggtagaaagggcgacaaaggagaagctggagcagctggaagagatggccgtgac
ggggagaaaggagaccgtggtccttctgggcctgtaggctcccctggttccccaggagca
cctggattacctggcagcattggtcctcctggtcaggttgtgtatgtgaaaggagctgaa
gcgacaccaatcgcaggtccacaggggcccccaggagcgcccggcgtcccaggaatccct
ggagctgcaggaaccagaggagagagaggtctgcctggccttaaaggtgaacctggagac
ccaggagaggatggagcacctggcaaacctgggacgtcagtggatgtacagaaagctctg
gcaggctttggtattcaggtgtctgatctgaaggtggttgtggacagcaaggacacactt
tcgctacttaaagtgctgaagacagagaaaggtgaaaagggagataagggtgagcctgga
cagagaggaccatctggagcagatggtgctcgtggttttcctggagagaggggctccaaa
ggagacgcaggggaccgaggacctgtgggaccagcggggcctccaggaagagccattgtc
gaacgagggccagagggaccttcggggcctgccggggagcctggcaagccaggaatacca
ggtcttcctggacgagctggggaactaggagaggcaggaagaccaggagataagggggaa
agaggagagaaaggtgacagaggagattctggtcgggatggattaacaggaccagctggc
ccgccaggtcaaaagggagaatctgctgactcagtcctggttgggtcccctggggctaga
ggccctcctggagtatctgggttgaagggggaacctggtgctacaggaccatcaggacct
aaaggagaccgcggtttcgtgggacctcgaggtgataaaggtgagagaggagagccagga
gaaaaaggccgtgacggctcacagggaacacagggagagcctggaaaaccgggccaggat
gggaaaccgggcttccctgggttcccaggagttctaggcagaccgggaaacccaggagag
ccaggcattagggggcaaactggtcccacgggtcccactgggctgccaggtccaccaggt
gtaaagggtaatcaaggagaagcaggtgttggtgtacagggtcctcctggcgcacagggg
agcacaggtctgccaggaccagcaggtcccccaggagctgtgggtccacaggggcctccg
ggactgccagggcaggtgggtgaagcaggcaaacctggtgttcctggaagagatggggtg
cctggcaaggaaggaatacctggattaccaggaaagcagggcattgcaggacctccaggc
ctggctggcttgaagggggagcagggagacagcgggcctccagggaaggctgtggctgga
cctcctggacccaaaggagagaggggtcctcctggtttaatgctgccaggcacagctgga
gagagaggcccaactggtgaaaagggtaacaagggagacaaaggtgttgctggcatcaaa
ggagaaagaggacaagctggtgaatcaggagaacctggagaagatggggcacagggatct
cccgggccaaaaggcgataagggagagaaaggcataggacttgcaggtcctcctggtcgg
attgggcctccaggtttaaaaggggatccagggatgcctggtccagctggtcctccaggt
cctgcggggaaaacaggagacagcgggccacctggtgtgagaggagaaaatggacaacca
ggacctcctggacccccgggggagaggggtctccaaggctttgctggccgtgcaggaaat
gttggtcctcctggccctcctggacctcctggattggcaggatctcctggtactaacggg
gtcaaaggagacaagggggaaactggtgttggcgtccccggtgcaagaggagaaagagga
gatccagggcccagaggcgaggagggtcgagccggcttggatggggagagaggaccatct
ggtcctccagggaaccgtggggctcggggagagaagggagacagcgggccgcaaggtgac
aaaggagagaagggggacactgtgctggtgggaggacctcctggagaaaagggcaacaaa
ggagaaacaggtgacagaggacccaagggtatacaaggagaaaagggggtcaaaggtcaa
gaaggtccaccaggagaagtgggtttgagaggagaacctggagaacgaggatctactggt
ttcccaggtgccagaggacctggtgggcagaagggagaagcaggccaacctggagtacct
ggtgaatcgggattaccggggaaagatggactgccagggcgtaagggtgaacagggagag
actggcaacgtgggaataagaggagttaagggtgaccgaggacccaagggaatttgtgga
ggcgatggacccaagggagaaaagggaaatgctggtatcaatggaagatcaggcctacca
gggagaaagggtgaacagggggacattggaccttctggggccccggggatccctggaaaa
gagggactagttggtcccaagggtgaccgtggttttgatgggattgcaggacccaaagga
gctcagggagagaaaggtgaaaggggtttacctggtgtacctggtcctccaggtcccaga
ggggcggatggagcccctggcttgaccggcccacaagggccagctggtactaagggccct
gaggggctccagggacaaaagggggagagaggtccaattggccctgccacggttggtccg
cgtggtatcccaggaatcccgggggagcgaggagagccgggagacatgggcccagatgga
gccaagggagacagaggagaggcaggcatgacggaggaagaggtcagagagtatgttcgc
tcagagatgagtcagcactgtgcgtgtggaggttcaggtccgaaccttcggtacccgcca
gtcagggctctgcctacaccagagcaacaattggcgctgaagggtgaggagggccgtgag
ctgcacatggtggtaaataccaatgacccagactacgagcatgtctactccgtcgaatcc
tatgacgaccccttggaggagatgctctacttcacatctccctcggccaaccagagtgat
ggtgaggttgacagaaagaaatctgagaaaacagtcagagttgaacctaacaaatcagca
agtgctgacgatcaggcaacagctgatggtcaggaagcagtcaaagttacacatctgaaa
gcagtcaagtccagaactgtcaggtccaagaggagagtcaaaggggaagctccagcagac
ccatgcttgctgcccatggatgagggaagctgtggaaagtacactatgcgctggtacttt
aacagacaggctcaagcctgcaggcccttcatctacagcggctgtgaaggaaatgacaac
cgtttcctttacctggaggagtgtgaagagacctgtcttggggaggctgatggttctcct
ccctttaagacagcgcgatga
DBGET
integrated database retrieval system
