Oreochromis niloticus (Nile tilapia): 109194272
Help
Entry
109194272 CDS
T06104
Symbol
col27a1
Name
(RefSeq) collagen alpha-1(XXVII) chain isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
onl
Oreochromis niloticus (Nile tilapia)
Pathway
onl04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
onl00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
109194272 (col27a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
onl00536
]
109194272 (col27a1)
Glycosaminoglycan binding proteins [BR:
onl00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
109194272 (col27a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Laminin_G_3
Laminin_G_2
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
109194272
NCBI-ProteinID:
XP_019209970
LinkDB
All DBs
Position
LG7:complement(30761728..30861606)
Genome browser
AA seq
1408 aa
AA seq
DB search
MLLKLLKWTVCVLGLLTTSNASPDDASVDFGGESGSGMLQTDEVNILQELSFHITNSSNA
SMTVGESKCPVLQVGQYSTLALPLRQIFIDGFADEFSLLVQLRSPQKEERSVFTMLSPDN
HVMLQLRISAHAIIFIGTQQRHYEFPVSGLSDGKWHHVAISVAAKRLALYVDCSLLESVD
WVYYGMGISTDGLLMVGGTIESFETPFEGHLQQLAFLMGDPDAAQQHCSHHPPLCSVTAL
KPPRLPRTNNPLQNILLSSNDLENLLGDPKDKSFLSFGRTNAFLRRESSRGDGTVPSRPN
RKGSVGRGDVLLVDEDTDLLDTIFQNGRQVNPRLKPSRNGPKGSQKGKPELSSKNMEENI
TTEKKKDSNGRTSSLFPGKPSDDVIDLDIGGSPKKPSLGFPAPPKIPSDPRSTTDSSKET
TTISPLPDVKGSSRTTQSSIQFDRRHEHKGRLPEKGRPATVAIVSRDGNLVLGSDGKMYR
LQRGPPGRMGPPGLEGCPGEPGLPGFKGDKGKTGPEGRQGNKGERGPPGPPGLPTLYLWR
NTAEEWAAFQQTSFYQLLAAGWPSREGPAGPPGEMGRPGRQGPPGEPGERGRPGMPGEMG
DRGPRGPPGRSGTAGRDGDNGEDGQPGSPGVPGSQGPWGYRGERGPKGEKGDEGLTGPRG
PRGEIGEPGEKGGTGLPGPQGPVGPRGPQGIRGGAGPEGPPGPDGESGLDGLPGLPGPPG
APGATGRVGAQGVNGSRGDIGPAGCVGPKGPQGAPGFEGQIGPTGLRGPQGHLGLTGSPG
PKGDPGPVGPMGARGDPGSEGPMGAPGRKGDVGFPGRTGNRGPDGEKGDPGAKGDRGIQG
ATGISGPQGERGLVGFPGFPGAKGQPGPEGTEGIDGETGLQGKQGSRGLKGNRGPDGRDG
KPGPRGNKGLTGQRGHPGQPGPPGLPGPPGTEGAEGKPGTQGPSGAAGVAGTKGPMGFQG
IPGVRGTDGPPGSAGPTGKSGPPGSPGPPGERGFTGKPGLEGPQGPVGMYGIPGTVGMRG
PPGLTGQRGEPGLRGLPGPVGKPGPPGLQGPPGEKGPRGPQGRPGDDGPNGIQGPQGPPG
LPGPDGAIGKPGPMGSKGPPGPQGPQGQAGIPGPQGADGLSGDSGERGPKGLPGLPGEAG
PMGRQGQQGPPGHTGIEGPPGRKGDQGDLGPCGKPGPKGPPGERGPQGGKGLQGPPGPVG
KEGDVGLPGEAGDPGPKGEKGELGPLGLSGREGPWGPLGENGDRGPKGEKGNLGLMGEPG
LMGELGPVGLPGLLGMTGPPGRPGPDGPQGEKGEHGPVGITGPPGSGGPRGIMGSHGVRG
DPGRLGPPGPVGHAGPKGHEGSKGEPGELGLKGEPGPPGPPGEPGDDGLPGIQGPGALPG
LEGPPGEVGTPGSLRSYRCSWSSRKTGT
NT seq
4227 nt
NT seq
+upstream
nt +downstream
nt
atgttgctcaagttgttaaaatggacagtttgcgttctcgggctcctcacgacgagcaac
gcctcacctgacgacgcatcggtcgacttcgggggagagtccggttccgggatgctgcaa
acagatgaggtgaacatcctgcaggagctttcttttcatatcacaaacagcagtaatgcc
tccatgactgtgggtgagagcaagtgtccagtcctgcaggtgggacagtactccaccttg
gccctccctctgagacagatcttcatcgatgggtttgcagatgagttcagtttgctggta
cagttgcgaagtcctcagaaggaagaacgaagtgtcttcactatgctcagccccgacaat
catgtcatgctgcagctgcggatcagtgctcatgccatcatcttcataggaacgcagcag
agacactatgagttcccggtcagtggtttgtctgatggaaagtggcaccatgtggctatc
agtgtggctgccaagcggctcgcactctatgtggactgctctctgctggagagtgtggac
tgggtttactacggcatggggatcagcaccgacggcctgctcatggttggaggaactatt
gagagctttgaaactccatttgaaggtcatcttcaacagctggccttcctgatgggagat
ccagatgctgcccagcagcactgtagccaccacccacccctctgcagtgtcactgccctc
aagcctccccgcttaccacgcaccaacaacccgctgcagaatatactgttgtcctcaaat
gacctggagaacctgctgggggatccaaaggacaagtcttttttgagctttggccgaact
aatgcgttcctgcgacgagaaagttcacgaggcgatgggacggtcccttctagacccaat
cggaaaggttcagtaggtcgtggggatgtccttttggtggatgaggacactgacttgttg
gatacgatcttccaaaatggcagacaagtgaacccacggttaaaaccttccagaaatgga
ccgaagggaagccagaaagggaaacctgaactatcatctaaaaatatggaggaaaacatt
accacagagaagaaaaaagattctaatgggaggacttcatcactgtttcctggaaagcct
tcagatgatgtaatagacctggacattggaggttctcctaagaagccctcgctaggtttt
cctgcacctcctaagattccttcagatcccagatccaccacagattccagcaaagagacc
acaactatttcacctttacctgatgtcaaggggagctcccgcaccacgcagagttccata
cagtttgatcgtagacatgagcacaaaggcagactaccagaaaaaggccgccctgcaact
gtagccattgtgtctagagatggaaacctggttttgggctcagatggcaaaatgtaccgg
cttcagagaggcccacctggccgtatgggtccgcccgggctggaaggttgtcctggtgag
cctggcctccctgggtttaaaggtgataagggaaagacaggccctgaagggagacaagga
aacaagggggagaggggacctcctggaccgccaggtttaccaaccctctacctgtggagg
aacactgctgaggaatgggctgcattccagcaaaccagtttctaccagttgcttgctgca
ggttggcctagtagagaaggccccgcaggaccacctggagaaatgggcaggcctggcaga
caggggccacctggtgaacccggggagcgaggaagaccagggatgccaggagagatgggg
gatcgaggtcctcgtggccctccaggacgatccgggactgcagggcgagatggggacaat
ggggaagatggtcagccggggtcacctggtgttcccggatcacagggcccgtggggatac
aggggagagcgaggacctaaaggggaaaaaggtgatgagggtcttactggccccagaggt
ccaagaggtgaaattggtgaacctggcgagaagggtggaactggtttacctggtccacaa
ggccctgttggaccccgcgggcctcagggaatccgaggtggcgctgggccagagggaccc
cctgggcctgatggggagagcggactggatggcctcccaggtctgccagggccgccgggt
gcaccaggtgctacaggacgagttggcgcacaaggagttaatggctcaaggggggacatt
ggacctgctggctgtgttggccctaaaggcccacagggggctccaggtttcgagggacag
attggacctacgggactcagaggaccgcaagggcatctaggattgacgggttctcctggc
cccaaaggagatcctgggcctgtggggcctatgggggcccggggggatcccggctcagag
ggaccaatgggtgcaccagggagaaagggtgatgtgggttttcctggaagaacgggtaac
agaggaccagacggggaaaagggtgatccaggagctaaaggcgacagaggtatacagggg
gcaacaggcattagcggtcctcagggagagaggggcctcgttggattcccaggtttccca
ggagccaaaggccagcccggccctgaaggcactgagggcatcgatggcgaaactggcctc
cagggaaaacagggcagccgtgggttaaagggaaacagaggaccagatggacgtgatggc
aaaccaggacccagggggaacaagggtttgaccggacaaagaggtcatcctggccaacca
ggcccaccgggtttgccggggccacctggaacagagggagcagaaggaaagcctggtaca
cagggtccctcaggtgcagctggtgttgctggtactaaaggaccgatggggtttcaagga
attcccggagtgagaggaacagatggtccaccaggttctgcggggccaacggggaagtcg
gggcctccaggatcaccaggacccccaggagaaaggggtttcacagggaagccaggcttg
gagggacctcagggccctgtaggcatgtatggtatcccaggaactgtgggaatgcgcggg
cctccaggtttgacaggacagaggggggagccaggtttacgaggattacccgggcctgtt
gggaagccaggacctccaggtttgcaaggtcctcctggagagaagggaccccggggacca
cagggtcgtccaggagatgacgggcccaatgggatacagggtccacaaggtcctccaggt
ctaccaggtcctgatggggcaattggaaaaccaggaccaatgggaagcaaagggcctcca
ggacctcagggaccacagggacaagcaggaatcccaggtccgcagggtgctgatggatta
tcaggggactcgggggaaagaggacctaagggtttacctggattacctggagaagcaggc
cccatgggacgacaaggacagcagggtcctcctggccacacaggaatcgagggcccacct
ggaaggaaaggagaccagggggatttaggaccttgtgggaaacctggtcctaaagggcca
ccaggagagaggggacctcagggggggaaaggactacaaggaccacctggaccagtcggt
aaagagggggatgttggacttcccggtgaagctggagatcctggacccaagggggagaag
ggtgagctgggacctcttggtttgtctggtcgagagggtccctggggacccctcggagaa
aatggtgacaggggtccaaagggggagaagggcaacttgggactgatgggtgaaccagga
ctgatgggtgaactaggccctgtgggtctgcctgggttactgggaatgacaggtcctcct
ggacgtccaggtcccgatggacctcagggagagaagggcgagcatgggcctgtaggaatt
actggaccgccgggttcaggaggccctcgggggataatggggtcacatggtgtcagagga
gatcctgggaggctcggaccacctggtccagtaggacatgcaggaccaaagggacatgag
ggaagtaaaggagaacctggggaactgggactcaagggagagccaggacctccaggccca
ccaggggagccgggcgatgatggtcttccaggaattcagggtcctggagctctgccaggg
ttagaggggcctcccggagaggtggggaccccagggtctctcaggtcctataggtgttcc
tggagttcaaggaagaccgggacctga
DBGET
integrated database retrieval system
