Oreochromis niloticus (Nile tilapia): 109196163
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Entry
109196163 CDS
T06104
Name
(RefSeq) PAN2-PAN3 deadenylation complex catalytic subunit PAN2
KO
K12571
PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:
3.1.13.4
]
Organism
onl
Oreochromis niloticus (Nile tilapia)
Pathway
onl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
onl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109196163
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
onl03019
]
109196163
Enzymes [BR:
onl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
109196163
Messenger RNA biogenesis [BR:
onl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109196163
mRNA degradation factors
3'-5' decay
Pan complex
109196163
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAN2_N
UCH_1
UCH
Motif
Other DBs
NCBI-GeneID:
109196163
NCBI-ProteinID:
XP_019205045
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All DBs
Position
LG20:9781336..9786463
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AA seq
607 aa
AA seq
DB search
MNSPHWTPHWTPHWTPHWSPQWTPGGLEPSMNSYLIPNLHQDVGMNTQELAVTVPKPVHV
KKGMFSALHSKVSEAGIPVTATHFDLQREMLWMGNYTGHVQSFLGPTMAHYSSFQVHATD
AIRHMQSLDTGVLFLSKCNLRCYTCGGLVMSDYWMEEGADMHSLLMTDNMLLMGGLQNYV
AEVDLNTLQETQKVTLRDLHTFRTQKFDAFPGGLSDFDVHGNLLAVSGFSSRGPNERFLM
VYDLRRMRAATPLWVHVDPFFVRFIPTYTSRLAIISQTGMKLAWNHNLWPCSPIPTVQAT
PSSRWAPGMEPEIPQTIESVGFNSYVENPYACPCNQVPANEEGTPGHGYYNHVPESPTQS
DEEPLLHTVPEKYRKVTIKYSKCGREDFDFKHYNRTLFAGLEPQIPNAYCNCMIQVLYFL
EPVRCLVQNHSCHKEFCLACELGFLFHMLDLSQGDPCQASNFLRALRNIPEAKEMGLILS
NCEETTGTVELGSQRSSYRHCPPLPIALQEDDFSEIPCLVFSWPQHPGRNPRQHGGLMHG
PEALQEVPGAVSGRRESLHDEGALRSLRQRLPAELESPGFGCEIVRLSGLNALSFHPQVL
LCFPLGL
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atgaactctcctcactggactcctcactggactcctcactggactcctcactggtctcct
cagtggactcctgggggactggagccctccatgaactcatatctgattccaaacctccac
caagatgtgggaatgaacacacaggagctggctgtgaccgttcctaagcctgtgcacgta
aagaaggggatgttttctgcgctgcacagtaaagtttcagaagctggcatcccggtcact
gcaacacattttgacctgcagcgggaaatgctctggatgggaaactacacgggtcatgta
caatccttccttggacctacaatggcacactactcttctttccaagtgcacgcaactgat
gccatcagacacatgcagagtttggacacaggcgtgctcttcctttctaaatgcaacctc
agatgttacacttgtggaggcctggtcatgtctgattattggatggaagaaggagctgat
atgcacagtctcctcatgactgataacatgctgctcatggggggattacaaaactatgtg
gctgaagttgacttgaatacacttcaagaaactcaaaaagtgacccttcgagacttgcat
acatttaggacacaaaagtttgatgcatttcctggcggcctgtcagactttgatgttcac
ggaaacctcttggctgtgagtgggttctccagccgagggccgaatgaacgtttcctcatg
gtgtatgacctccgcaggatgcgagctgcaacccccctttgggtgcatgtggatcccttc
ttcgtgcgcttcattcctacctacacgtcacggctcgcaatcatctcacagacaggtatg
aagctggcctggaatcataacctgtggccctgctctcccatccccactgtccaggctaca
cccagctcaagatgggctcctgggatggagccagaaatcccacaaactattgaaagtgtt
ggcttcaacagttatgtggaaaatccttacgcctgcccctgtaaccaggtccctgccaac
gaagaagggacacctggtcatggttattacaaccatgtccctgaatctccaacacagagt
gatgaagagccgctccttcacactgttccagaaaagtacagaaaggtgacaattaaatac
tctaaatgtggacgggaagattttgacttcaaacattacaacaggacgttgtttgctggc
ctggagccgcagattcccaacgcctactgtaactgcatgatccaggtgttatacttcctg
gagccagttcgctgccttgttcagaatcattcgtgccacaaggagttttgtttggcttgt
gaactcggcttcctctttcacatgttggatttgtcacaaggagatccatgtcaggccagc
aacttcctcagagcacttcgaaacatccctgaagccaaagagatgggcctgatcctctca
aactgtgaggagacaacgggaacagtcgagctaggttcccaaagatcaagttatcgacac
tgtccacctcttccgattgccctacaagaggatgatttctctgaaattccttgcttggta
ttttcttggcctcaacatccagggagaaacccacgacagcacggaggactcatgcacggc
cctgaagctttacaggaagtacctggagctgtatcaggaaggagggaatcattacatgac
gaaggtgctctacgaagtctacgacaaaggcttccagctgaactggaaagtcccggattt
ggatgcgagatagtccgtctgagtggactgaatgcactctccttccatccacaggtgctg
ctgtgcttccctctgggactgtga
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