Oppia nitens: 128960571
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Entry
128960571 CDS
T11717
Name
(RefSeq) ATP-dependent RNA helicase DDX42-like
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
ont
Oppia nitens
Pathway
ont03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ont00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128960571
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ont03041
]
128960571
Enzymes [BR:
ont01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
128960571
Spliceosome [BR:
ont03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
128960571
Complex B
128960571
Complex C
U2 SnRNP specific factors
128960571
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
ERCC3_RAD25_C
Helicase_C_2
Motif
Other DBs
NCBI-GeneID:
128960571
NCBI-ProteinID:
XP_054162662
LinkDB
All DBs
Position
Unknown
AA seq
752 aa
AA seq
DB search
MDYMDSDNRRDFRTVPPPENINKRQSYSKCTDIPTESKTFGFNYVNRRQRHRTDDDYFED
DENPDENPDEQQTPYQPNPGSPLLNTDCNDNNNDEDDEEEDPLDAFMAGLEKQTKEPNKP
SKSMPSMSSMANKLKTDKLSKMKGIRDDIEKEDEEESYYRYMEENPMAGVGTFVANSDDE
DADDIEYDTEGNPIGNFKSKMIDPLPPIYHSEIIYSSFEKNFYVEHEDIAKLSITECNDL
RQKLGIKVSGLLPPKPVASFGHFGFDDQLLKTIRKLEYTQPTPIQAQAVPAALNGRDIIG
IAKTGSGKTAAFIWPLLVHIMDQPDLKPGDGPIGLILAPTRELAQQIYTEAKRFGKVYGI
NIVCAYGGGNKYEQSKDLENGAEIIVATPGRLIDLIKSKSTNLLRVTFLVLDEADRMFDM
GFEPQVRSISNHVRPDRQTLMFSATFKKRVEKLARDILIDPIRIVQGEVGEANEDITQVM
IVFDSGPKKWEWLTSKIVEFTTQGSVLIFVTKKANAEELATNLKTHDMEVVLLHGDMNQI
ERNKVITEFKRKQVSILVATDVAARGLDITHVKTVVNYDMARDIDTHTHRIGRTGRAGEK
GVAYTLVTDKDTEFAGHLVRNLEGANQLVPDKLLALAMQSQWFKKSRFRGKNAKKLNVGG
VGLGFKSRPRLGLGAQSSALNYDKCNTYSSSIISSSTPTTSSLQTNSQSNRVNVMKSAFS
AQYKSNFTAATDTQWKSNMSSDEKPKKKSRWN
NT seq
2259 nt
NT seq
+upstream
nt +downstream
nt
atggattacatggattccgataatcgccgcgatttccgaacggttccgccgccagaaaac
atcaataaaagacaatcttatagcaaatgtacagacattccgacggaatctaagactttt
ggattcaattatgttaaccgaagacaaagacaccgaacagatgacgactatttcgaagac
gacgaaaacccagacgaaaacccagacgaacaacaaacaccttatcagccaaatccggga
agtcctttgttaaacaccgattgcaatgataataataatgatgaagacgatgaagaagaa
gaccctttggatgcttttatggctggtcttgaaaaacaaacaaaagaaccgaacaaacca
tcaaaatctatgccaagcatgtcatcgatggccaacaaattgaaaaccgataaattatct
aaaatgaaaggtataagagatgatatagaaaaagaagatgaagaagaatcgtattataga
tatatggaagagaacccaatggccggcgtcgggacatttgtggccaacagtgatgacgaa
gacgctgatgatatagaatacgataccgaaggcaatcctatagggaatttcaagtcaaaa
atgattgatccattgccaccaatatatcactcggaaatcatttactcctcatttgaaaag
aacttttatgttgaacacgaagacatcgcaaaattatcgataactgaatgcaatgattta
agacaaaaacttgggattaaagtttcaggtcttttacctcctaaacctgttgccagtttt
ggacacttcggttttgatgaccaattgttgaaaaccatccgaaaattagagtacactcaa
cccacacctattcaagctcaggccgttcccgcagcactcaatggacgagatattatcggt
attgcaaaaactggttcaggaaaaacagcagcatttatttggccacttttggtgcatatc
atggatcagcccgatctgaaaccaggtgatggacctattggtctaattttggcgccgact
cgtgaattagctcaacaaatatatactgaggccaagagattcggtaaagtttatggaatt
aatatagtgtgcgcttatggaggaggaaataaatacgaacagtcaaaggatttggaaaat
ggtgccgaaataattgtggccacacctggccgattaatagacttaattaaatctaaatca
acgaacttattgagagtaactttcctggtcttggatgaggccgaccgcatgtttgacatg
ggatttgaacctcaagtcagatctataagtaatcacgtgagacctgatcgacaaacactt
atgtttagtgcgacgtttaagaaaagggttgaaaagttggccagagatatactaatagat
ccaattcgtatagttcaaggagaagtcggagaagcaaatgaggacatcacacaagtaatg
attgtgtttgattcgggaccaaaaaagtgggagtggttaacatcaaagattgttgaattc
acaacacaaggaagtgttttgatttttgtcactaaaaaagccaatgcagaggaattggct
acaaatcttaagactcatgatatggaagttgttttacttcacggagatatgaatcaaatt
gaaagaaataaagttattacagaattcaagcgcaaacaggtctccatacttgtagccaca
gatgttgccgctcgaggtcttgatatcactcacgttaaaacagttgtcaattatgatatg
gccagagatatcgatacgcatacacatagaattggaagaactggtagagcgggtgaaaaa
ggagtggcgtatactttagttactgataaagacactgagtttgcgggacatttagttcgc
aatctggagggcgccaatcaactcgttcccgacaaactgttagctttggcaatgcaaagc
caatggtttaagaaatcacgttttagagggaaaaatgcgaagaaattaaatgtcggcgga
gttggacttggatttaaaagccgtccacgacttggtttaggagctcaaagctctgcttta
aattatgataaatgcaatacatattcttcatctataatatcatcatcgactccaacaacg
agttcattgcaaactaattcacaatcaaatcgtgtaaatgttatgaaatctgcgttttcg
gctcaatataagtctaatttcacggccgctacagacacacaatggaagtctaatatgagt
tcagatgaaaaaccaaagaaaaaaagtcgttggaattga
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