Oppia nitens: 128964618
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Entry
128964618 CDS
T11717
Name
(RefSeq) pre-mRNA-processing factor 19-like
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
ont Oppia nitens
Pathway
ont03040
Spliceosome
ont04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
ont00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128964618
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
128964618
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ont03041
]
128964618
04121 Ubiquitin system [BR:
ont04121
]
128964618
03400 DNA repair and recombination proteins [BR:
ont03400
]
128964618
Enzymes [BR:
ont01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
128964618
Spliceosome [BR:
ont03041
]
Complex B
Other components
Prp19 complex
128964618
Complex C
Prp19-CDC5 complex
128964618
Ubiquitin system [BR:
ont04121
]
Ubiquitin ligases (E3)
U-box type E3
128964618
DNA repair and recombination proteins [BR:
ont03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
128964618
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_Prp19
Beta-prop_WDR5
Beta-prop_THOC3
Beta-prop_WDR3_1st
WD40
Beta-prop_IFT122_1st
WD40_WDHD1_1st
Prp19
WDR55
Beta-prop_WDR36-Utp21_2nd
Beta-prop_EML_2
WD40_CDC20-Fz
Beta-prop_WDR3_2nd
WD40_Gbeta
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
Beta-prop_EML
Beta-prop_WDR36-Utp21_1st
DSE1_N
CFAP251_N
WD40_MABP1-WDR62_1st
ANAPC4_WD40
Beta-prop_WDR75_1st
Beta-prop_Aladin
Beta-prop_TEP1_C
Beta-prop_SCAP
Beta-prop_Vps41
Beta-prop_IFT140_1st
ASA1
Beta-prop_EIPR1
Beta-prop_NOL10_N
NBCH_WD40
Beta-prop_VPS8
Beta-prop_HPS5
Beta-prop_WDR41
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
Beta-prop_DCAF4
Beta-prop_WDR19_1st
Beta-prop_SPT8
PAC11
Tricorn_2nd
WD40_RFWD3
Beta-prop_WDR35_TULP_N
Beta-prop_LRRK2
U-box
Beta-prop_ACSF4
PROPPIN
Beta-prop_RIC1_2nd
ATG16
CCDC13
Motif
Other DBs
NCBI-GeneID:
128964618
NCBI-ProteinID:
XP_054167222
LinkDB
All DBs
Position
Unknown
AA seq
504 aa
AA seq
DB search
MSLCCAISNEVPEVAVVSPTSGAIFEKRLIVKYIEEHGTDPINGDKLSEDMLVEIKTPAI
VKPRPPSATSIPAILKTLQDEWDAVMLHSFTLRQQLQTARQELSHALYQHDAACRVIARL
TKEVTAAREALATLKPKPGGSGGGGQVGGNQPNLNPTAEPTVEAGITPEVLEKLEQKASV
LTAERKRRGKSVPEDLVKPEEFRTYTAVASHSGLHSVSIPGILAVDICPTDSNKILTGGN
DKTAIVFNKDNEQVIASLKGHTKKVTSVIFHPNQDNVITASPDSQIRIWHLPTTQTIQVV
RAHDGPITAISLHATGDYVLSTSTDEYWAFSDINTGQVLTKVGDTTTPHALTTAQFHPDG
LIFGTGTSDSLIKIWDLKERSNVANFPGHSGSISAMAFSENGYYLATSADDSTIKLWDLR
KLKNIKTLFLDENYQVKDLCFDQSGTYLAVAGTDVRVYESISKQWENLKTFADHTAAATG
VRFGRDSRYLASVSLDRALKIYSK
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atgtcgttgtgttgcgccataagcaatgaagtgcccgaagtggccgttgtgtcgccgact
tcgggtgcgatcttcgagaagcgacttattgtcaaatatatcgaagaacacggaaccgat
ccaatcaatggcgacaaattatctgaagacatgttagttgaaattaagacaccagctatt
gtgaagccgagaccgccgtcggccacaagcattccggccattttgaagacacttcaagac
gaatgggatgctgtaatgcttcacagctttactttaagacaacagttgcaaacggctcgt
caggaactgtctcacgctctctaccaacacgacgccgcctgtcgtgtcatcgctagactt
accaaagaggtgaccgccgcacgtgaagcattggccactcttaaaccaaaaccaggaggc
agtggtggtggcggacaagtgggtggcaatcaaccaaatttgaatccaactgcagaaccg
acagttgaagcgggtataacaccagaagtattggaaaaattggaacaaaaggcgtctgtt
cttacagctgaacgtaaacgaagaggaaaatcagttcccgaagatcttgtcaaacctgaa
gagtttcgaacatatactgcagttgcttctcattcgggtctccatagtgttagtattccc
ggaatattagcggtcgatatttgtccgactgattcaaataagatactgacgggtggtaat
gataagacagccattgttttcaataaagataacgaacaagtgattgcatcgcttaaaggc
cacacaaagaaagtgacatcagttatatttcatccaaatcaagacaacgttatcactgca
tctcccgacagtcagatacgtatttggcatttacccaccactcagaccattcaagttgtc
cgcgcacacgacggacccatcactgctatatcacttcacgcaacgggtgattacgtgttg
agcacatccactgacgaatattgggctttttctgacattaacaccggacaagtgctgacc
aaagttggcgatacaacaacaccgcatgcattgacaaccgcccaattccatcccgacgga
cttatctttggcaccggaacttcggattcattaatcaagatatgggatttaaaagagcgc
agtaatgtcgccaactttcccggacattcgggttctatatcagcgatggctttctctgaa
aatggttattatttggccacttctgccgatgactcgactataaagctctgggatttacga
aaattgaagaatattaagacattgtttttggatgagaattatcaggtcaaagatctttgc
tttgatcaaagcggtacttatttggctgtcgccggaactgatgtcagagtttatgagagt
ataagcaaacagtgggaaaatttgaagacatttgccgatcacacggctgccgccactggc
gttcgttttggacgcgattcccgttatttggcttcagtatcattggatagagcgctcaaa
atatattctaaataa
DBGET
integrated database retrieval system
