Oppia nitens: 128965689
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Entry
128965689 CDS
T11717
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm5
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
ont Oppia nitens
Pathway
ont03018
RNA degradation
ont03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ont00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128965689
09123 Folding, sorting and degradation
03018 RNA degradation
128965689
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ont03019
]
128965689
03041 Spliceosome [BR:
ont03041
]
128965689
Messenger RNA biogenesis [BR:
ont03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
128965689
mRNA degradation factors
5'-3' decay
Lsm complex
128965689
Spliceosome [BR:
ont03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
128965689
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
128965689
NCBI-ProteinID:
XP_054168411
LinkDB
All DBs
Position
Unknown
AA seq
91 aa
AA seq
DB search
MSTTTVTNPSALLPLELIDKCIGSRIHIIMKNDKEIVGTLLGFDDFVNMVLEDVIEYEST
PEGRRVTKLDQILLNGNNITMMVPGGEMPDN
NT seq
276 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaccacaactgtcaccaatccatcagctcttctgcctttagagctgatcgacaag
tgtatcggttctcgcattcatatcattatgaagaacgacaaagagattgtgggaacactt
cttggatttgatgactttgtcaatatggtcttagaagatgtcattgaatatgagagtaca
ccagaaggacgtcgtgtcactaaattggatcaaatcttattgaatggaaataacattaca
atgatggttcccggaggagaaatgccagacaattga
DBGET
integrated database retrieval system
